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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5222-RA through 18771 annotations produced 1 hits



(CG5222):

Annotation Number : CG5222
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036570
Gbrowse : chr3L:16096530-16098711 (-) // 100.0 //
Probeset : 1628335_at
Accessions : protein= NP_648838;, nucleotide= NM_140581;
Pathway : 0005847 // mRNA cleavage and polyadenylation specificity factor complex // inferred from sequence or structural similari
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036570.
VDRC has 3 RNAi stocks for FBgn0036570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 24 of 4 0.90None
Head34 ± 34 of 4 0.70Down
Eye33 ± 24 of 4 0.69Down
Thoracicoabdominal ganglion44 ± 04 of 4 0.90None
Salivary gland62 ± 44 of 4 1.31None
Crop63 ± 44 of 4 1.30Up
Midgut35 ± 04 of 4 0.70None
Tubule105 ± 134 of 4 2.20Up
Hindgut42 ± 24 of 4 0.90None
Heart32 ± 14 of 4 0.67Down
Fat body34 ± 64 of 4 0.71Down
Ovary95 ± 24 of 4 2.00Up
Testis14 ± 04 of 4 0.30Down
Male accessory glands52 ± 24 of 4 1.10None
Virgin spermatheca51 ± 34 of 4 1.07None
Mated spermatheca65 ± 44 of 4 1.36Up
Adult carcass32 ± 32 of 4 0.70Down
Larval CNS98 ± 54 of 4 2.04Up
Larval Salivary gland97 ± 44 of 4 2.02Up
Larval midgut45 ± 34 of 4 0.95None
Larval tubule114 ± 44 of 4 2.40Up
Larval hindgut56 ± 14 of 4 1.16None
Larval fat body38 ± 34 of 4 0.80None
Larval trachea58 ± 44 of 4 1.21None
Larval carcass47 ± 14 of 4 0.99None
S2 cells (growing)101 ± 24 of 4 2.12Up
Whole fly48 ± 44 of 4

Looking for CG5222-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime