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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5224-RA through 18771 annotations produced 1 hits



(CG5224):

Annotation Number : CG5224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034354
Gbrowse : chr2R:14391114-14392349 (+) // 100.0 //
Probeset : 1624800_at
Accessions : protein= NP_611339;, nucleotide= NM_137495;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0034354.
VDRC has 3 RNAi stocks for FBgn0034354 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 04 of 4 0.20Down
Head98 24 of 4 0.80None
Eye64 24 of 4 0.52Down
Thoracicoabdominal ganglion19 04 of 4 0.20Down
Salivary gland124 94 of 4 0.99None
Crop126 34 of 4 1.00None
Midgut89 104 of 4 0.70None
Tubule219 174 of 4 1.80Up
Hindgut466 204 of 4 3.70Up
Heart92 74 of 4 0.74None
Fat body39 44 of 4 0.32Down
Ovary210 74 of 4 1.70Up
Testis14 04 of 4 0.10Down
Male accessory glands159 134 of 4 1.30None
Virgin spermatheca117 44 of 4 0.94None
Mated spermatheca146 144 of 4 1.18None
Adult carcass73 34 of 4 0.60Down
Larval CNS133 64 of 4 1.07None
Larval Salivary gland185 94 of 4 1.48Up
Larval midgut97 124 of 4 0.78None
Larval tubule89 104 of 4 0.70None
Larval hindgut221 94 of 4 1.78Up
Larval fat body37 54 of 4 0.30Down
Larval trachea495 324 of 4 3.97Up
Larval carcass384 264 of 4 3.08Up
S2 cells (growing)399 184 of 4 3.20Up
Whole fly124 114 of 4

Looking for CG5224-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime