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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5225-RA through 18771 annotations produced 1 hits


Annotation Number : CG5225
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038468
Gbrowse : chr3R:12854427-12856386 (+) // 100.0 //
Probeset : 1624563_at
Accessions : protein= NP_650587;, nucleotide= NM_142330;
FlyMine data for FBgn0038468.
BioGrid reports that CG5225 interacts with CG7017 CG7277 CG7808 CG8942 CG9734 .
VDRC has 3 RNAi stocks for FBgn0038468 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 1.00None
Head2 10 of 4 0.60None
Eye2 00 of 4 0.42None
Thoracicoabdominal ganglion4 01 of 4 1.00None
Salivary gland17 31 of 4 3.36Up
Crop6 12 of 4 1.30None
Midgut2 10 of 4 0.60None
Tubule4 10 of 4 1.00None
Hindgut8 13 of 4 1.60None
Heart2 01 of 4 0.50None
Fat body11 23 of 4 2.25Up
Ovary2 00 of 4 0.40None
Testis2 10 of 4 0.50None
Male accessory glands7 11 of 4 1.50None
Virgin spermatheca9 22 of 4 1.77None
Mated spermatheca12 32 of 4 2.56None
Adult carcass3 00 of 4 0.60None
Larval CNS6 04 of 4 1.22None
Larval Salivary gland5 10 of 4 1.10None
Larval midgut1 00 of 4 0.34None
Larval tubule8 22 of 4 1.60None
Larval hindgut7 13 of 4 1.38None
Larval fat body7 10 of 4 1.40None
Larval trachea8 13 of 4 1.62None
Larval carcass25 44 of 4 5.11Up
S2 cells (growing)1 10 of 4 0.39None
Whole fly5 11 of 4

Looking for CG5225-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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