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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5231-RA through 18771 annotations produced 1 hits



Lipoic acid synthase (Las):

Annotation Number : CG5231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029158
Gbrowse : chr3L:20423697-20425456 (-) // 100.0 //
Probeset : 1623470_at
Accessions : protein= NP_524183;, nucleotide= NM_079459;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred fro
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred fr
FlyMine data for FBgn0029158.
BDGP gene expression has embryonic in situ data for Las: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0029158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain261 64 of 4 1.10Up
Head239 84 of 4 1.00None
Eye192 124 of 4 0.83Down
Thoracicoabdominal ganglion320 64 of 4 1.40Up
Salivary gland195 144 of 4 0.84None
Crop152 84 of 4 0.70Down
Midgut128 64 of 4 0.60Down
Tubule234 14 of 4 1.00Up
Hindgut246 64 of 4 1.10None
Heart217 64 of 4 0.94None
Fat body191 134 of 4 0.82Down
Ovary247 24 of 4 1.10None
Testis359 104 of 4 1.50Up
Male accessory glands75 34 of 4 0.30Down
Virgin spermatheca217 24 of 4 0.94None
Mated spermatheca198 64 of 4 0.85Down
Adult carcass513 294 of 4 2.20Up
Larval CNS90 64 of 4 0.39Down
Larval Salivary gland127 24 of 4 0.55Down
Larval midgut82 44 of 4 0.35Down
Larval tubule108 54 of 4 0.50Down
Larval hindgut149 64 of 4 0.64Down
Larval fat body189 194 of 4 0.80None
Larval trachea103 34 of 4 0.45Down
Larval carcass147 74 of 4 0.63Down
S2 cells (growing)137 34 of 4 0.59Down
Whole fly232 84 of 4

Looking for CG5231-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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