Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5235-RA through 18771 annotations produced 1 hits



(CG5235):

Annotation Number : CG5235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036565
Gbrowse : chr3L:16080728-16083487 (-) // 100.0 //
Probeset : 1625310_at
Accessions : protein= NP_648833;, nucleotide= NM_140576;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred f
FlyMine data for FBgn0036565.
BDGP gene expression has embryonic in situ data for CG5235: 21 pix of staining in 11 body parts.
Homophila reports that CG5235 is a close match (4e-60) to human gene DBH (NP_000778), a gene associated with Dopamine beta-hydroxylase deficiency, 223360 (3);Parkinson disease, resistance to, 168600 (3);[Dopamine-beta-hydroxylase activity levels, plasma] (3).
TRiP has 2 RNAi stocks for FBgn0036565 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 02 of 4 0.10Down
Head4 ± 11 of 4 0.10Down
Eye3 ± 01 of 4 0.08Down
Thoracicoabdominal ganglion4 ± 12 of 4 0.10Down
Salivary gland10 ± 03 of 4 0.23Down
Crop10 ± 14 of 4 0.20Down
Midgut9 ± 14 of 4 0.20Down
Tubule12 ± 04 of 4 0.30Down
Hindgut9 ± 13 of 4 0.20Down
Heart7 ± 12 of 4 0.16Down
Fat body8 ± 20 of 4 0.19Down
Ovary172 ± 84 of 4 3.70Up
Testis4 ± 12 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca9 ± 13 of 4 0.20Down
Mated spermatheca12 ± 04 of 4 0.27Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS169 ± 104 of 4 3.67Up
Larval Salivary gland14 ± 14 of 4 0.31Down
Larval midgut12 ± 14 of 4 0.26Down
Larval tubule9 ± 14 of 4 0.20Down
Larval hindgut11 ± 04 of 4 0.24Down
Larval fat body19 ± 34 of 4 0.40Down
Larval trachea16 ± 24 of 4 0.35Down
Larval carcass12 ± 14 of 4 0.28Down
S2 cells (growing)105 ± 44 of 4 2.27Up
Whole fly46 ± 24 of 4

Looking for CG5235-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime