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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5237-RA through 18771 annotations produced 1 hits



(unc79):

Annotation Number : CG5237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038693
Gbrowse : chr3R:15056485-15071852 (-) // 100.0 //
Probeset : 1623267_at
Accessions : protein= NP_001163652; /// NP_001163653; /// NP_650795;, nucleotide= NM_001170181; /// NM_001170182; /// NM_142538;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0038693.
VDRC has 2 RNAi stocks for FBgn0038693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1164 504 of 457.10Up
Head138 44 of 4 6.80Up
Eye42 34 of 4 2.06Up
Thoracicoabdominal ganglion827 404 of 440.50Up
Salivary gland3 10 of 4 0.19Down
Crop0 00 of 4 0.00Down
Midgut3 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart3 00 of 4 0.16Down
Fat body4 20 of 4 0.19Down
Ovary1 00 of 4 0.10Down
Testis14 24 of 4 0.70None
Male accessory glands23 24 of 4 1.20None
Virgin spermatheca2 10 of 4 0.13Down
Mated spermatheca3 10 of 4 0.18Down
Adult carcass12 20 of 4 0.60None
Larval CNS120 164 of 4 5.91Up
Larval Salivary gland7 20 of 4 0.37Down
Larval midgut4 20 of 4 0.21Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body5 10 of 4 0.30Down
Larval trachea4 20 of 4 0.22Down
Larval carcass4 10 of 4 0.22Down
S2 cells (growing)216 34 of 410.61Up
Whole fly20 24 of 4

Looking for CG5237-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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