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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5246-RA through 18771 annotations produced 1 hits



(CG5246):

Annotation Number : CG5246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038484
Gbrowse : chr3R:12961926-12962921 (+) // 99.5 //
Probeset : 1640355_at
Accessions : protein= NP_650603;, nucleotide= NM_142346;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038484.
BDGP gene expression has embryonic in situ data for CG5246: 4 pix of staining in 1 body parts.
Homophila reports that CG5246 is a close match (2e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG5246 interacts with CG9319 .
VDRC has 2 RNAi stocks for FBgn0038484 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head5 10 of 4 0.00Down
Eye4 21 of 4 0.03Down
Thoracicoabdominal ganglion4 11 of 4 0.00Down
Salivary gland15 50 of 4 0.10Down
Crop4 10 of 4 0.00Down
Midgut1056 1174 of 4 7.00Up
Tubule26 152 of 4 0.20Down
Hindgut82 44 of 4 0.50None
Heart121 94 of 4 0.80None
Fat body1073 1634 of 4 7.09Up
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands7 10 of 4 0.00Down
Virgin spermatheca109 294 of 4 0.72None
Mated spermatheca889 1264 of 4 5.87Up
Adult carcass138 94 of 4 0.90None
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland6 10 of 4 0.04Down
Larval midgut1740 1474 of 411.49Up
Larval tubule3 10 of 4 0.00Down
Larval hindgut8 52 of 4 0.06Down
Larval fat body13 24 of 4 0.10Down
Larval trachea3 10 of 4 0.03Down
Larval carcass3 10 of 4 0.02Down
S2 cells (growing)23 14 of 4 0.15Down
Whole fly151 224 of 4

Looking for CG5246-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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