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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5250-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:15053984-15054998 (-) // 100.0 //):

Annotation Number : CG5250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1633343_at
Accessions : protein= EC:3.6.3.9, nucleotide=
Interpro : 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0006813 // potassium ion transport // inf


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.20Down
Head2 ± 00 of 4 0.10Down
Eye4 ± 10 of 4 0.24Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.30Down
Salivary gland14 ± 30 of 4 0.74None
Crop4 ± 10 of 4 0.20Down
Midgut9 ± 10 of 4 0.50Down
Tubule3 ± 00 of 4 0.20Down
Hindgut2 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.12Down
Fat body1 ± 00 of 4 0.09Down
Ovary0 ± 00 of 4 0.00Down
Testis256 ± 124 of 413.50Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 20 of 4 0.20Down
Mated spermatheca4 ± 10 of 4 0.26Down
Adult carcass4 ± 00 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.17Down
Larval Salivary gland2 ± 00 of 4 0.11Down
Larval midgut11 ± 10 of 4 0.58Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.30Down
Larval fat body38 ± 221 of 4 2.00None
Larval trachea3 ± 21 of 4 0.20Down
Larval carcass1 ± 00 of 4 0.08Down
S2 cells (growing)2 ± 00 of 4 0.15Down
Whole fly19 ± 04 of 4

Looking for CG5250-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime