Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5252-RA through 18771 annotations produced 1 hits



Ranbp9 (Ranbp9):

Annotation Number : CG5252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037894
Gbrowse : chr3R:7238243-7241864 (+) // 100.0 //
Probeset : 1631954_at
Accessions : protein= NP_650068;, nucleotide= NM_141811;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008536 // Ran GTPase binding // non-traceable author stat
FlyMine data for FBgn0037894.
BDGP gene expression has embryonic in situ data for Ranbp9: 21 pix of staining in 8 body parts.
BioGrid reports that CG5252 interacts with CG9520 .
TRiP has 2 RNAi stocks for FBgn0037894 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037894 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 04 of 4 0.20Down
Head54 34 of 4 0.30Down
Eye38 34 of 4 0.21Down
Thoracicoabdominal ganglion50 34 of 4 0.30Down
Salivary gland79 94 of 4 0.44Down
Crop94 34 of 4 0.50Down
Midgut68 44 of 4 0.40Down
Tubule85 84 of 4 0.50Down
Hindgut77 24 of 4 0.40Down
Heart64 34 of 4 0.36Down
Fat body105 124 of 4 0.59Down
Ovary380 124 of 4 2.10Up
Testis273 74 of 4 1.50Up
Male accessory glands167 44 of 4 0.90None
Virgin spermatheca84 44 of 4 0.47Down
Mated spermatheca96 54 of 4 0.54Down
Adult carcass78 54 of 4 0.40Down
Larval CNS313 74 of 4 1.75Up
Larval Salivary gland238 134 of 4 1.33Up
Larval midgut89 54 of 4 0.50Down
Larval tubule96 14 of 4 0.50Down
Larval hindgut160 94 of 4 0.90None
Larval fat body125 244 of 4 0.70None
Larval trachea211 374 of 4 1.18None
Larval carcass157 154 of 4 0.88None
S2 cells (growing)210 44 of 4 1.17Up
Whole fly179 34 of 4

Looking for CG5252-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime