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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5262-RA through 18771 annotations produced 1 hits



(CG5262):

Annotation Number : CG5262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036988
Gbrowse : chr3L:20421061-20423584 (-) // 100.0 //
Probeset : 1631273_at
Accessions : protein= NP_649223;, nucleotide= NM_140966;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0036988.
BDGP gene expression has embryonic in situ data for CG5262: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 24 of 4 1.00None
Head90 64 of 4 1.00None
Eye55 34 of 4 0.62Down
Thoracicoabdominal ganglion75 24 of 4 0.90Down
Salivary gland149 34 of 4 1.69Up
Crop126 154 of 4 1.40None
Midgut97 44 of 4 1.10None
Tubule98 44 of 4 1.10Up
Hindgut93 24 of 4 1.10None
Heart118 54 of 4 1.34Up
Fat body182 184 of 4 2.06Up
Ovary259 114 of 4 2.90Up
Testis35 04 of 4 0.40Down
Male accessory glands70 44 of 4 0.80Down
Virgin spermatheca230 134 of 4 2.60Up
Mated spermatheca180 114 of 4 2.03Up
Adult carcass103 74 of 4 1.20None
Larval CNS64 44 of 4 0.72Down
Larval Salivary gland155 144 of 4 1.75Up
Larval midgut238 434 of 4 2.70Up
Larval tubule218 74 of 4 2.50Up
Larval hindgut133 134 of 4 1.51Up
Larval fat body513 854 of 4 5.80Up
Larval trachea62 94 of 4 0.70Down
Larval carcass84 124 of 4 0.96None
S2 cells (growing)90 24 of 4 1.02None
Whole fly88 34 of 4

Looking for CG5262-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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