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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5276-RA through 18771 annotations produced 1 hits



(CG5276):

Annotation Number : CG5276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037900
Gbrowse : chr3R:7257459-7259272 (+) // 100.0 //
Probeset : 1636403_at
Accessions : protein= NP_650074;, nucleotide= NM_141817;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0016462 // pyrophosphatase activity // inferre
FlyMine data for FBgn0037900.
BDGP gene expression has embryonic in situ data for CG5276: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 14 of 4 0.80Down
Head106 ± 44 of 4 0.60Down
Eye79 ± 24 of 4 0.44Down
Thoracicoabdominal ganglion142 ± 44 of 4 0.80Down
Salivary gland1477 ± 934 of 4 8.14Up
Crop181 ± 74 of 4 1.00None
Midgut137 ± 24 of 4 0.80Down
Tubule172 ± 94 of 4 1.00None
Hindgut148 ± 84 of 4 0.80Down
Heart103 ± 14 of 4 0.57Down
Fat body83 ± 84 of 4 0.46Down
Ovary181 ± 74 of 4 1.00None
Testis848 ± 274 of 4 4.70Up
Male accessory glands631 ± 244 of 4 3.50Up
Virgin spermatheca95 ± 24 of 4 0.52Down
Mated spermatheca104 ± 54 of 4 0.58Down
Adult carcass131 ± 64 of 4 0.70Down
Larval CNS106 ± 114 of 4 0.59Down
Larval Salivary gland1002 ± 634 of 4 5.53Up
Larval midgut117 ± 44 of 4 0.64Down
Larval tubule179 ± 24 of 4 1.00None
Larval hindgut140 ± 84 of 4 0.77Down
Larval fat body154 ± 314 of 4 0.80None
Larval trachea128 ± 154 of 4 0.71Down
Larval carcass157 ± 134 of 4 0.87None
S2 cells (growing)263 ± 114 of 4 1.45Up
Whole fly181 ± 64 of 4

Looking for CG5276-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime