FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5279-RA through 18771 annotations produced 1 hits

Rhodopsin5 (Rh5):

Annotation Number : CG5279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014019
Gbrowse : chr2L:12008391-12009846 (+) // 100.0 //
Probeset : 1628806_at
Accessions : protein= NP_477096;, nucleotide= NM_057748;
Pathway : blue light phototransduction // non-traceable author statement /// 0016038 // absorption of visible light // inferred f
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
FlyMine data for FBgn0014019.
Homophila reports that CG5279 is a close match (3e-11) to human gene RGR (NP_001012740), a gene associated with Retinitis pigmentosa, autosomal dominant (3);Retinitis pigmentosa, autosomal recessive (3).
BioGrid reports that CG5279 interacts with CG4550 CG4550 .
VDRC has 1 RNAi stocks for FBgn0014019 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 2	3 of 4	0.30	Down
Head	1530 ± 54	4 of 4	24.10	Up
Eye	5777 ± 87	4 of 4	90.95	Up
Thoracicoabdominal ganglion	15 ± 0	0 of 4	0.20	Down
Salivary gland	10 ± 3	0 of 4	0.16	Down
Crop	11 ± 2	0 of 4	0.20	Down
Midgut	20 ± 2	0 of 4	0.30	Down
Tubule	12 ± 0	0 of 4	0.20	Down
Hindgut	16 ± 1	1 of 4	0.30	Down
Heart	14 ± 3	2 of 4	0.23	Down
Fat body	17 ± 7	3 of 4	0.27	Down
Ovary	8 ± 0	0 of 4	0.10	Down
Testis	13 ± 0	0 of 4	0.20	Down
Male accessory glands	3 ± 0	0 of 4	0.10	Down
Virgin spermatheca	13 ± 1	0 of 4	0.22	Down
Mated spermatheca	14 ± 2	1 of 4	0.23	Down
Adult carcass	17 ± 2	0 of 4	0.30	Down
Larval CNS	12 ± 7	3 of 4	0.19	Down
Larval Salivary gland	15 ± 3	0 of 4	0.24	Down
Larval midgut	24 ± 3	0 of 4	0.39	Down
Larval tubule	12 ± 3	0 of 4	0.20	Down
Larval hindgut	11 ± 0	0 of 4	0.18	Down
Larval fat body	18 ± 4	0 of 4	0.30	Down
Larval trachea	104 ± 194	1 of 4	1.64	None
Larval carcass	17 ± 1	0 of 4	0.27	Down
S2 cells (growing)	6 ± 1	0 of 4	0.10	Down
Whole fly	63 ± 8	4 of 4

Looking for CG5279-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720