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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5282-RA through 18771 annotations produced 1 hits



(CG5282):

Annotation Number : CG5282
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036986
Gbrowse : chr3L:20417513-20419213 (-) // 100.0 //
Probeset : 1631532_at
Accessions : protein= NP_649221;, nucleotide= NM_140964;
Interpro : 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activ
FlyMine data for FBgn0036986.
BDGP gene expression has embryonic in situ data for CG5282: 13 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0036986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain646 ± 194 of 425.40Up
Head187 ± 74 of 4 7.30Up
Eye66 ± 14 of 4 2.61Up
Thoracicoabdominal ganglion571 ± 194 of 422.40Up
Salivary gland8 ± 10 of 4 0.33Down
Crop6 ± 22 of 4 0.20Down
Midgut7 ± 21 of 4 0.30Down
Tubule19 ± 13 of 4 0.80Down
Hindgut9 ± 00 of 4 0.40Down
Heart10 ± 13 of 4 0.40Down
Fat body11 ± 33 of 4 0.46Down
Ovary5 ± 02 of 4 0.20Down
Testis4 ± 00 of 4 0.20Down
Male accessory glands15 ± 21 of 4 0.60Down
Virgin spermatheca6 ± 10 of 4 0.25Down
Mated spermatheca9 ± 10 of 4 0.36Down
Adult carcass18 ± 24 of 4 0.70None
Larval CNS265 ± 184 of 410.41Up
Larval Salivary gland10 ± 22 of 4 0.41Down
Larval midgut4 ± 10 of 4 0.17Down
Larval tubule12 ± 21 of 4 0.50Down
Larval hindgut5 ± 11 of 4 0.23Down
Larval fat body7 ± 10 of 4 0.30Down
Larval trachea8 ± 21 of 4 0.33Down
Larval carcass10 ± 42 of 4 0.42Down
S2 cells (growing)6 ± 10 of 4 0.27Down
Whole fly25 ± 14 of 4

Looking for CG5282-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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