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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5290-RA through 18771 annotations produced 1 hits



(CG5290):

Annotation Number : CG5290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036772
Gbrowse : chr3L:17902578-17905657 (-) // 100.0 //
Probeset : 1630551_at
Accessions : protein= NP_649026;, nucleotide= NM_140769;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0036772.
VDRC has 2 RNAi stocks for FBgn0036772 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 24 of 4 0.40Down
Head30 ± 14 of 4 0.40Down
Eye21 ± 24 of 4 0.31Down
Thoracicoabdominal ganglion27 ± 04 of 4 0.40Down
Salivary gland24 ± 34 of 4 0.36Down
Crop50 ± 24 of 4 0.70Down
Midgut34 ± 14 of 4 0.50Down
Tubule60 ± 54 of 4 0.90None
Hindgut33 ± 34 of 4 0.50Down
Heart42 ± 14 of 4 0.63Down
Fat body44 ± 44 of 4 0.66Down
Ovary117 ± 24 of 4 1.70Up
Testis41 ± 04 of 4 0.60Down
Male accessory glands58 ± 34 of 4 0.90None
Virgin spermatheca31 ± 24 of 4 0.46Down
Mated spermatheca47 ± 34 of 4 0.70Down
Adult carcass28 ± 14 of 4 0.40Down
Larval CNS106 ± 34 of 4 1.56Up
Larval Salivary gland122 ± 54 of 4 1.81Up
Larval midgut33 ± 14 of 4 0.50Down
Larval tubule41 ± 24 of 4 0.60Down
Larval hindgut71 ± 54 of 4 1.05None
Larval fat body26 ± 44 of 4 0.40Down
Larval trachea82 ± 134 of 4 1.21None
Larval carcass53 ± 84 of 4 0.78None
S2 cells (growing)144 ± 64 of 4 2.12Up
Whole fly68 ± 24 of 4

Looking for CG5290-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime