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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5304-RA through 18771 annotations produced 1 hits



lethal (2) 01810 (l(2)01810):

Annotation Number : CG5304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010497
Gbrowse : chr2L:12027439-12034123 (+) // 100.0 //
Probeset : 1640405_at
Accessions : protein= NP_620115;, nucleotide= NM_138760;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0010497.
Homophila reports that CG5304 is a close match (1e-66) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
TRiP has 1 RNAi stocks for FBgn0010497 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010497 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head108 124 of 4 0.10Down
Eye66 54 of 4 0.07Down
Thoracicoabdominal ganglion6 11 of 4 0.00Down
Salivary gland2994 1364 of 4 3.26Up
Crop19 53 of 4 0.00Down
Midgut3041 2134 of 4 3.30Up
Tubule3120 1294 of 4 3.40Up
Hindgut2333 714 of 4 2.50Up
Heart16 14 of 4 0.02Down
Fat body13 81 of 4 0.01Down
Ovary1020 294 of 4 1.10None
Testis3 00 of 4 0.00Down
Male accessory glands106 84 of 4 0.10Down
Virgin spermatheca105 104 of 4 0.11Down
Mated spermatheca108 104 of 4 0.12Down
Adult carcass72 24 of 4 0.10Down
Larval CNS466 704 of 4 0.51Down
Larval Salivary gland186 194 of 4 0.20Down
Larval midgut2221 684 of 4 2.42Up
Larval tubule155 134 of 4 0.20Down
Larval hindgut1466 1544 of 4 1.59Up
Larval fat body265 374 of 4 0.30Down
Larval trachea441 894 of 4 0.48Down
Larval carcass881 1784 of 4 0.96None
S2 cells (growing)17 04 of 4 0.02Down
Whole fly919 574 of 4

Looking for CG5304-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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