FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5313-RA through 18771 annotations produced 1 hits

Drosophila replication factor C (RfC3):

Annotation Number : CG5313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032244
Gbrowse : chr2L:10419210-10420612 (+) // 100.0 //
Probeset : 1637166_at
Accessions : protein= NP_609399;, nucleotide= NM_135555;
Pathway : 0005663 // DNA replication factor C complex // inferred from sequence or structural similarity /// 0005663 // DNA replic
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequenc
FlyMine data for FBgn0032244.
BioGrid reports that CG5313 interacts with CG8142 CG7352 .
VDRC has 3 RNAi stocks for FBgn0032244 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 1	4 of 4	0.20	Down
Head	20 ± 0	4 of 4	0.10	Down
Eye	23 ± 2	4 of 4	0.17	Down
Thoracicoabdominal ganglion	40 ± 2	4 of 4	0.30	Down
Salivary gland	15 ± 4	0 of 4	0.11	Down
Crop	21 ± 2	4 of 4	0.20	Down
Midgut	23 ± 4	2 of 4	0.20	Down
Tubule	16 ± 2	0 of 4	0.10	Down
Hindgut	18 ± 1	2 of 4	0.10	Down
Heart	16 ± 0	4 of 4	0.12	Down
Fat body	11 ± 6	1 of 4	0.08	Down
Ovary	291 ± 4	4 of 4	2.10	Up
Testis	71 ± 4	4 of 4	0.50	Down
Male accessory glands	100 ± 4	4 of 4	0.70	Down
Virgin spermatheca	18 ± 1	3 of 4	0.13	Down
Mated spermatheca	21 ± 1	4 of 4	0.15	Down
Adult carcass	16 ± 5	0 of 4	0.10	Down
Larval CNS	178 ± 5	4 of 4	1.25	Up
Larval Salivary gland	68 ± 2	4 of 4	0.48	Down
Larval midgut	23 ± 2	4 of 4	0.16	Down
Larval tubule	17 ± 2	2 of 4	0.10	Down
Larval hindgut	19 ± 2	2 of 4	0.13	Down
Larval fat body	23 ± 2	2 of 4	0.20	Down
Larval trachea	75 ± 11	4 of 4	0.53	Down
Larval carcass	44 ± 3	4 of 4	0.31	Down
S2 cells (growing)	121 ± 3	4 of 4	0.85	None
Whole fly	142 ± 8	4 of 4

Looking for CG5313-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720