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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5316-RA through 18771 annotations produced 2 hits



(CG5316):

Annotation Number : CG5316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038704
Gbrowse : chr3R:15229202-15230042 (+) // 100.0 //
Probeset : 1636719_s_at
Accessions : protein= NP_650805; /// NP_732421; /// NP_732422;, nucleotide= NM_142548; /// NM_169858; /// NM_169859;
Pathway : via spliceosome // inferred by curator /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 //
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0038704.
Homophila reports that CG5316 is a close match (1e-18) to human gene AOA;AOA1;APTX (NP_778241), a gene associated with Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920 (3);Coenzyme Q10 deficiency, 607426 (3).
BioGrid reports that CG5316 interacts with CG7928 CG8364 .
TRiP has 2 RNAi stocks for FBgn0038704 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 14 of 4 1.70Up
Head17 43 of 4 0.90None
Eye5 10 of 4 0.28Down
Thoracicoabdominal ganglion21 42 of 4 1.10None
Salivary gland14 40 of 4 0.78None
Crop34 34 of 4 1.80Up
Midgut19 21 of 4 1.00None
Tubule6 00 of 4 0.30Down
Hindgut19 03 of 4 1.00None
Heart6 10 of 4 0.36Down
Fat body13 32 of 4 0.73None
Ovary30 34 of 4 1.60Up
Testis25 24 of 4 1.30None
Male accessory glands26 12 of 4 1.40Up
Virgin spermatheca8 00 of 4 0.46Down
Mated spermatheca6 10 of 4 0.32Down
Adult carcass18 12 of 4 1.00None
Larval CNS20 14 of 4 1.08None
Larval Salivary gland19 32 of 4 1.02None
Larval midgut7 00 of 4 0.42Down
Larval tubule31 24 of 4 1.70Up
Larval hindgut11 00 of 4 0.61Down
Larval fat body49 34 of 4 2.70Up
Larval trachea6 30 of 4 0.34Down
Larval carcass9 10 of 4 0.51Down
S2 cells (growing)64 14 of 4 3.44Up
Whole fly18 23 of 4



(CG5316):

Annotation Number : CG5316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038704
Gbrowse : chr3R:15229202-15230042 (+) // 100.0 //
Probeset : 1629958_at
Accessions : protein= NP_650805; /// NP_732421; /// NP_732422;, nucleotide= NM_142548; /// NM_169858; /// NM_169859;
Pathway : via spliceosome // inferred by curator /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 //
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0038704.
Homophila reports that CG5316 is a close match (1e-18) to human gene AOA;AOA1;APTX (NP_778241), a gene associated with Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920 (3);Coenzyme Q10 deficiency, 607426 (3).
BioGrid reports that CG5316 interacts with CG7928 CG8364 .
TRiP has 2 RNAi stocks for FBgn0038704 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.70None
Head1 10 of 4 1.30None
Eye3 00 of 4 2.70Up
Thoracicoabdominal ganglion1 00 of 4 0.90None
Salivary gland3 10 of 4 2.54None
Crop0 00 of 4 0.50None
Midgut0 00 of 4 0.40None
Tubule2 00 of 4 1.50None
Hindgut0 00 of 4 0.60None
Heart4 10 of 4 3.02None
Fat body3 41 of 4 2.89None
Ovary0 00 of 4 0.30None
Testis4 01 of 4 3.10Up
Male accessory glands3 20 of 4 2.90None
Virgin spermatheca2 00 of 4 2.09None
Mated spermatheca2 10 of 4 2.07None
Adult carcass3 20 of 4 2.30None
Larval CNS0 00 of 4 0.54None
Larval Salivary gland3 10 of 4 2.33None
Larval midgut0 00 of 4 0.52None
Larval tubule0 00 of 4 0.30None
Larval hindgut2 00 of 4 2.06None
Larval fat body1 00 of 4 1.30None
Larval trachea1 00 of 4 1.31None
Larval carcass1 01 of 4 1.24None
S2 cells (growing)1 00 of 4 1.46None
Whole fly1 00 of 4

Looking for CG5316-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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