FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5316-RA through 18771 annotations produced 2 hits

(CG5316):

Annotation Number : CG5316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038704
Gbrowse : chr3R:15229202-15230042 (+) // 100.0 //
Probeset : 1629958_at
Accessions : protein= NP_650805; /// NP_732421; /// NP_732422;, nucleotide= NM_142548; /// NM_169858; /// NM_169859;
Pathway : via spliceosome // inferred by curator /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 //
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0038704.
Homophila reports that CG5316 is a close match (1e-18) to human gene AOA;AOA1;APTX (NP_778241), a gene associated with Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920 (3);Coenzyme Q10 deficiency, 607426 (3).
BioGrid reports that CG5316 interacts with CG7928 CG8364 .
TRiP has 2 RNAi stocks for FBgn0038704 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038704 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	1.70	None
Head	1 ± 1	0 of 4	1.30	None
Eye	3 ± 0	0 of 4	2.70	Up
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.90	None
Salivary gland	3 ± 1	0 of 4	2.54	None
Crop	0 ± 0	0 of 4	0.50	None
Midgut	0 ± 0	0 of 4	0.40	None
Tubule	2 ± 0	0 of 4	1.50	None
Hindgut	0 ± 0	0 of 4	0.60	None
Heart	4 ± 1	0 of 4	3.02	None
Fat body	3 ± 4	1 of 4	2.89	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	4 ± 0	1 of 4	3.10	Up
Male accessory glands	3 ± 2	0 of 4	2.90	None
Virgin spermatheca	2 ± 0	0 of 4	2.09	None
Mated spermatheca	2 ± 1	0 of 4	2.07	None
Adult carcass	3 ± 2	0 of 4	2.30	None
Larval CNS	0 ± 0	0 of 4	0.54	None
Larval Salivary gland	3 ± 1	0 of 4	2.33	None
Larval midgut	0 ± 0	0 of 4	0.52	None
Larval tubule	0 ± 0	0 of 4	0.30	None
Larval hindgut	2 ± 0	0 of 4	2.06	None
Larval fat body	1 ± 0	0 of 4	1.30	None
Larval trachea	1 ± 0	0 of 4	1.31	None
Larval carcass	1 ± 0	1 of 4	1.24	None
S2 cells (growing)	1 ± 0	0 of 4	1.46	None
Whole fly	1 ± 0	0 of 4

(CG5316):

Annotation Number : CG5316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038704
Gbrowse : chr3R:15229202-15230042 (+) // 100.0 //
Probeset : 1636719_s_at
Accessions : protein= NP_650805; /// NP_732421; /// NP_732422;, nucleotide= NM_142548; /// NM_169858; /// NM_169859;
Pathway : via spliceosome // inferred by curator /// 0006281 // DNA repair // inferred from electronic annotation /// 0006974 //
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0038704.
Homophila reports that CG5316 is a close match (1e-18) to human gene AOA;AOA1;APTX (NP_778241), a gene associated with Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920 (3);Coenzyme Q10 deficiency, 607426 (3).
BioGrid reports that CG5316 interacts with CG7928 CG8364 .
TRiP has 2 RNAi stocks for FBgn0038704 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038704 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	31 ± 1	4 of 4	1.70	Up
Head	17 ± 4	3 of 4	0.90	None
Eye	5 ± 1	0 of 4	0.28	Down
Thoracicoabdominal ganglion	21 ± 4	2 of 4	1.10	None
Salivary gland	14 ± 4	0 of 4	0.78	None
Crop	34 ± 3	4 of 4	1.80	Up
Midgut	19 ± 2	1 of 4	1.00	None
Tubule	6 ± 0	0 of 4	0.30	Down
Hindgut	19 ± 0	3 of 4	1.00	None
Heart	6 ± 1	0 of 4	0.36	Down
Fat body	13 ± 3	2 of 4	0.73	None
Ovary	30 ± 3	4 of 4	1.60	Up
Testis	25 ± 2	4 of 4	1.30	None
Male accessory glands	26 ± 1	2 of 4	1.40	Up
Virgin spermatheca	8 ± 0	0 of 4	0.46	Down
Mated spermatheca	6 ± 1	0 of 4	0.32	Down
Adult carcass	18 ± 1	2 of 4	1.00	None
Larval CNS	20 ± 1	4 of 4	1.08	None
Larval Salivary gland	19 ± 3	2 of 4	1.02	None
Larval midgut	7 ± 0	0 of 4	0.42	Down
Larval tubule	31 ± 2	4 of 4	1.70	Up
Larval hindgut	11 ± 0	0 of 4	0.61	Down
Larval fat body	49 ± 3	4 of 4	2.70	Up
Larval trachea	6 ± 3	0 of 4	0.34	Down
Larval carcass	9 ± 1	0 of 4	0.51	Down
S2 cells (growing)	64 ± 1	4 of 4	3.44	Up
Whole fly	18 ± 2	3 of 4

Looking for CG5316-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720