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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5320-RA through 18771 annotations produced 1 hits



Glutamate dehydrogenase (Gdh):

Annotation Number : CG5320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001098
Gbrowse : chr3R:19761673-19768824 (-) // 100.0 //
Probeset : 1640835_a_at
Accessions : protein= NP_524470; /// NP_732922; /// NP_996274;, nucleotide= NM_079746; /// NM_170101; /// NM_206551;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotati
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0001098.
BDGP gene expression has embryonic in situ data for Gdh: 25 pix of staining in 14 body parts.
Homophila reports that CG5320 is a close match (1e-152) to human gene GLUD1 (NP_005262), a gene associated with Hyperinsulinism-hyperammonemia syndrome, 606762 (3).
VDRC has 2 RNAi stocks for FBgn0001098 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1457 ± 114 of 4 1.10Up
Head1906 ± 234 of 4 1.40Up
Eye3655 ± 1354 of 4 2.76Up
Thoracicoabdominal ganglion1881 ± 284 of 4 1.40Up
Salivary gland572 ± 464 of 4 0.43Down
Crop2108 ± 704 of 4 1.60Up
Midgut1711 ± 824 of 4 1.30Up
Tubule3675 ± 1154 of 4 2.80Up
Hindgut4508 ± 1044 of 4 3.40Up
Heart1314 ± 1124 of 4 0.99None
Fat body662 ± 994 of 4 0.50Down
Ovary974 ± 124 of 4 0.70Down
Testis364 ± 04 of 4 0.30Down
Male accessory glands700 ± 224 of 4 0.50Down
Virgin spermatheca441 ± 44 of 4 0.33Down
Mated spermatheca478 ± 314 of 4 0.36Down
Adult carcass1568 ± 884 of 4 1.20None
Larval CNS1362 ± 1044 of 4 1.03None
Larval Salivary gland1595 ± 564 of 4 1.20Up
Larval midgut3652 ± 524 of 4 2.76Up
Larval tubule856 ± 934 of 4 0.60Down
Larval hindgut4089 ± 924 of 4 3.09Up
Larval fat body1134 ± 2644 of 4 0.90None
Larval trachea2118 ± 1714 of 4 1.60Up
Larval carcass3289 ± 3604 of 4 2.48Up
S2 cells (growing)546 ± 34 of 4 0.41Down
Whole fly1325 ± 374 of 4

Looking for CG5320-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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