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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5321-RA through 18771 annotations produced 1 hits



chrX:14573636-14575862 (+) // 100.0 // ():

Annotation Number : CG5321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638582_at
Accessions : protein= , nucleotide= NP_572967;
Pathway : 0055114 // oxidation reduction // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 44 of 4 1.60Up
Head241 144 of 4 5.20Up
Eye102 194 of 4 2.22None
Thoracicoabdominal ganglion150 24 of 4 3.30Up
Salivary gland1 00 of 4 0.04Down
Crop2 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule296 334 of 4 6.40Up
Hindgut15 30 of 4 0.30Down
Heart353 234 of 4 7.67Up
Fat body752 1034 of 416.33Up
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca657 514 of 414.27Up
Mated spermatheca640 554 of 413.90Up
Adult carcass272 144 of 4 5.90Up
Larval CNS45 64 of 4 0.98None
Larval Salivary gland2 00 of 4 0.05Down
Larval midgut1 00 of 4 0.03Down
Larval tubule159 114 of 4 3.50Up
Larval hindgut1 00 of 4 0.02Down
Larval fat body312 394 of 4 6.80Up
Larval trachea21 53 of 4 0.46Down
Larval carcass2 00 of 4 0.06Down
S2 cells (growing)64 13 of 4 1.40Up
Whole fly46 44 of 4

Looking for CG5321-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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