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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5322-RA through 18771 annotations produced 1 hits



(CG5322):

Annotation Number : CG5322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032253
Gbrowse : chr2L:10452709-10455822 (-) // 100.0 //
Probeset : 1636976_at
Accessions : protein= NP_609407;, nucleotide= NM_135563;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0032253.
Homophila reports that CG5322 is a close match (0) to human gene MAN2B1;MANB (NP_000519), a gene associated with Mannosidosis, alpha-, types I and II, 248500 (3).
TRiP has 1 RNAi stocks for FBgn0032253 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 14 of 4 0.40Down
Head96 74 of 4 1.30None
Eye14 22 of 4 0.19Down
Thoracicoabdominal ganglion14 24 of 4 0.20Down
Salivary gland2 00 of 4 0.03Down
Crop1 00 of 4 0.00Down
Midgut942 464 of 412.20Up
Tubule3 00 of 4 0.00Down
Hindgut4 10 of 4 0.10Down
Heart90 94 of 4 1.17None
Fat body34 104 of 4 0.45Down
Ovary4 10 of 4 0.10Down
Testis8 11 of 4 0.10Down
Male accessory glands3 20 of 4 0.00Down
Virgin spermatheca42 24 of 4 0.55None
Mated spermatheca29 34 of 4 0.38Down
Adult carcass62 44 of 4 0.80None
Larval CNS10 34 of 4 0.14Down
Larval Salivary gland9 21 of 4 0.12Down
Larval midgut316 414 of 4 4.11Up
Larval tubule20 34 of 4 0.30Down
Larval hindgut11 00 of 4 0.15Down
Larval fat body1230 1624 of 416.00Up
Larval trachea17 33 of 4 0.23Down
Larval carcass47 24 of 4 0.62None
S2 cells (growing)3 10 of 4 0.05Down
Whole fly77 124 of 4

Looking for CG5322-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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