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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5326-RB through 18771 annotations produced 1 hits



(CG5326):

Annotation Number : CG5326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038983
Gbrowse : chr3R:18359027-18365639 (-) // 100.0 //
Probeset : 1623589_a_at
Accessions : protein= NP_651060;, nucleotide= NM_142803;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0038983.
BDGP gene expression has embryonic in situ data for CG5326: 4 pix of staining in 1 body parts.
Homophila reports that CG5326 is a close match (9e-11) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 5 RNAi stocks for FBgn0038983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head94 ± 164 of 4 1.20None
Eye21 ± 43 of 4 0.27Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.10Down
Salivary gland24 ± 40 of 4 0.30Down
Crop264 ± 104 of 4 3.30Up
Midgut25 ± 10 of 4 0.30Down
Tubule6 ± 10 of 4 0.10Down
Hindgut48 ± 12 of 4 0.60Down
Heart5 ± 10 of 4 0.07Down
Fat body9 ± 30 of 4 0.12Down
Ovary38 ± 54 of 4 0.50Down
Testis4 ± 00 of 4 0.10Down
Male accessory glands206 ± 224 of 4 2.60Up
Virgin spermatheca4 ± 10 of 4 0.05Down
Mated spermatheca8 ± 20 of 4 0.11Down
Adult carcass49 ± 20 of 4 0.60Down
Larval CNS10 ± 10 of 4 0.12Down
Larval Salivary gland16 ± 21 of 4 0.20Down
Larval midgut10 ± 20 of 4 0.13Down
Larval tubule11 ± 10 of 4 0.10Down
Larval hindgut28 ± 50 of 4 0.35Down
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea24 ± 63 of 4 0.30Down
Larval carcass23 ± 40 of 4 0.30Down
S2 cells (growing)8 ± 10 of 4 0.10Down
Whole fly80 ± 84 of 4

Looking for CG5326-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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