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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5336-RA through 18771 annotations produced 1 hits



Ced-12 (Ced-12):

Annotation Number : CG5336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032409
Gbrowse : chr2L:12097842-12100839 (+) // 100.0 //
Probeset : 1626390_at
Accessions : protein= NP_609548;, nucleotide= NM_135704;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0032409.
BDGP gene expression has embryonic in situ data for Ced-12: 4 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0032409 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 44 of 4 1.70Up
Head91 34 of 4 1.10None
Eye72 24 of 4 0.85None
Thoracicoabdominal ganglion146 44 of 4 1.70Up
Salivary gland52 60 of 4 0.62Down
Crop75 14 of 4 0.90None
Midgut91 54 of 4 1.10None
Tubule66 24 of 4 0.80Down
Hindgut65 34 of 4 0.80Down
Heart57 34 of 4 0.68Down
Fat body43 54 of 4 0.51Down
Ovary216 54 of 4 2.50Up
Testis37 14 of 4 0.40Down
Male accessory glands39 54 of 4 0.50Down
Virgin spermatheca34 24 of 4 0.41Down
Mated spermatheca34 04 of 4 0.40Down
Adult carcass51 43 of 4 0.60Down
Larval CNS155 74 of 4 1.83Up
Larval Salivary gland32 14 of 4 0.38Down
Larval midgut99 14 of 4 1.17Up
Larval tubule107 14 of 4 1.30Up
Larval hindgut99 44 of 4 1.16None
Larval fat body83 34 of 4 1.00None
Larval trachea97 104 of 4 1.14None
Larval carcass60 24 of 4 0.71Down
S2 cells (growing)307 34 of 4 3.62Up
Whole fly85 44 of 4

Looking for CG5336-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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