Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5344-RA through 18771 annotations produced 1 hits



whacked (wkd):

Annotation Number : CG5344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037917
Gbrowse : chr3R:7407300-7411219 (+) // 100.0 //
Probeset : 1634858_s_at
Accessions : protein= NP_650089; /// NP_731593;, nucleotide= NM_141832; /// NM_169402;
Pathway : open tracheal system // non-traceable author statement /// 0032313 // regulation of Rab GTPase activity // inferred fro
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0037917.
BDGP gene expression has embryonic in situ data for CG5344: 12 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0037917 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain464 ± 234 of 4 2.40Up
Head321 ± 284 of 4 1.70Up
Eye276 ± 94 of 4 1.45Up
Thoracicoabdominal ganglion476 ± 144 of 4 2.50Up
Salivary gland220 ± 134 of 4 1.15None
Crop226 ± 144 of 4 1.20None
Midgut223 ± 104 of 4 1.20None
Tubule436 ± 84 of 4 2.30Up
Hindgut787 ± 354 of 4 4.10Up
Heart468 ± 354 of 4 2.45Up
Fat body98 ± 84 of 4 0.52Down
Ovary237 ± 54 of 4 1.20Up
Testis65 ± 24 of 4 0.30Down
Male accessory glands436 ± 174 of 4 2.30Up
Virgin spermatheca154 ± 54 of 4 0.81None
Mated spermatheca187 ± 144 of 4 0.98None
Adult carcass241 ± 134 of 4 1.30Up
Larval CNS240 ± 204 of 4 1.26Up
Larval Salivary gland250 ± 204 of 4 1.31None
Larval midgut290 ± 104 of 4 1.52Up
Larval tubule287 ± 34 of 4 1.50Up
Larval hindgut338 ± 274 of 4 1.77Up
Larval fat body59 ± 64 of 4 0.30Down
Larval trachea211 ± 264 of 4 1.10None
Larval carcass143 ± 124 of 4 0.75Down
S2 cells (growing)110 ± 44 of 4 0.58Down
Whole fly191 ± 124 of 4

Looking for CG5344-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime