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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5347-RA through 18771 annotations produced 1 hits



(CG5347):

Annotation Number : CG5347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030578
Gbrowse : chrX:14670806-14672016 (+) // 100.0 //
Probeset : 1634600_at
Accessions : protein= NP_572970;, nucleotide= NM_132742;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0030578.
BDGP gene expression has embryonic in situ data for CG5347: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030578 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 11 of 4 0.20Down
Head3 01 of 4 0.30Down
Eye4 11 of 4 0.36Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland9 30 of 4 0.80None
Crop3 00 of 4 0.30Down
Midgut5 00 of 4 0.50Down
Tubule3 00 of 4 0.30Down
Hindgut4 11 of 4 0.40Down
Heart1 00 of 4 0.13Down
Fat body2 10 of 4 0.18Down
Ovary1 00 of 4 0.20Down
Testis136 24 of 412.10Up
Male accessory glands5 10 of 4 0.50Down
Virgin spermatheca3 00 of 4 0.34Down
Mated spermatheca3 10 of 4 0.30Down
Adult carcass4 21 of 4 0.40Down
Larval CNS2 01 of 4 0.19Down
Larval Salivary gland7 10 of 4 0.65None
Larval midgut7 10 of 4 0.64None
Larval tubule5 01 of 4 0.50Down
Larval hindgut4 01 of 4 0.41Down
Larval fat body17 52 of 4 1.60None
Larval trachea4 11 of 4 0.36Down
Larval carcass0 00 of 4 0.06Down
S2 cells (growing)5 00 of 4 0.46Down
Whole fly11 14 of 4

Looking for CG5347-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime