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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG5354-RA through 18771 annotations produced 1 hits

maternal effect early arrest E (pie):

Annotation Number : CG5354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005683
Gbrowse : chr2L:10420710-10422755 (-) // 99.2 //
Probeset : 1638286_at
Accessions : protein= NP_524740;, nucleotide= NM_080001;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0005683.
BDGP gene expression has embryonic in situ data for pie: 8 pix of staining in 1 body parts.
BioGrid reports that CG5354 interacts with CG6673 CG9238 CG10616 CG15006 CG31204 CG11182 CG7281 CG5473 CG31000 CG7948 CG5568 CG5731 CG2944 CG12723 CG31811 CG8823 CG6521 CG15112 CG17309 CG4184 CG10571 CG9027 CG5708 CG31646 CG7080 CG7924 CG7548 CG14478 CG11138 CG12085 CG10392 Dmel CG34354 .
VDRC has 3 RNAi stocks for FBgn0005683 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 04 of 4 0.30Down
Head9 30 of 4 0.20Down
Eye6 21 of 4 0.13Down
Thoracicoabdominal ganglion21 14 of 4 0.40Down
Salivary gland12 30 of 4 0.25Down
Crop16 20 of 4 0.30Down
Midgut5 20 of 4 0.10Down
Tubule7 20 of 4 0.20Down
Hindgut9 20 of 4 0.20Down
Heart10 12 of 4 0.21Down
Fat body19 83 of 4 0.39Down
Ovary156 34 of 4 3.10Up
Testis49 34 of 4 1.00None
Male accessory glands22 22 of 4 0.40Down
Virgin spermatheca13 12 of 4 0.27Down
Mated spermatheca17 23 of 4 0.33Down
Adult carcass12 40 of 4 0.20Down
Larval CNS58 44 of 4 1.13None
Larval Salivary gland15 10 of 4 0.30Down
Larval midgut6 20 of 4 0.13Down
Larval tubule12 31 of 4 0.20Down
Larval hindgut18 14 of 4 0.36Down
Larval fat body20 41 of 4 0.40Down
Larval trachea38 54 of 4 0.75None
Larval carcass19 22 of 4 0.39Down
S2 cells (growing)45 14 of 4 0.88None
Whole fly51 44 of 4

Looking for CG5354-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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