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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5374-RB through 18771 annotations produced 1 hits



Tcp1-like (T-cp1):

Annotation Number : CG5374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003676
Gbrowse : chr3R:18314806-18317153 (-) // 100.0 //
Probeset : 1627638_s_at
Accessions : protein= NP_524450; /// NP_732748;, nucleotide= NM_079726; /// NM_170016;
Pathway : engulfment // inferred from mutant phenotype /// 0007052 // mitotic spindle organization // inferred from mutant phenot
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthas
FlyMine data for FBgn0003676.
BDGP gene expression has embryonic in situ data for T-cp1: 16 pix of staining in 10 body parts.
Homophila reports that CG5374 is a close match (4e-60) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
TRiP has 1 RNAi stocks for FBgn0003676 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003676 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain229 64 of 4 0.20Down
Head222 54 of 4 0.20Down
Eye152 54 of 4 0.16Down
Thoracicoabdominal ganglion366 44 of 4 0.40Down
Salivary gland239 64 of 4 0.25Down
Crop490 184 of 4 0.50Down
Midgut578 284 of 4 0.60Down
Tubule797 844 of 4 0.80None
Hindgut485 164 of 4 0.50Down
Heart204 104 of 4 0.22Down
Fat body240 274 of 4 0.25Down
Ovary1438 214 of 4 1.50Up
Testis277 34 of 4 0.30Down
Male accessory glands566 464 of 4 0.60Down
Virgin spermatheca408 164 of 4 0.43Down
Mated spermatheca627 204 of 4 0.66Down
Adult carcass241 144 of 4 0.30Down
Larval CNS1240 444 of 4 1.31Up
Larval Salivary gland943 524 of 4 0.99None
Larval midgut461 404 of 4 0.49Down
Larval tubule324 34 of 4 0.30Down
Larval hindgut845 734 of 4 0.89None
Larval fat body196 124 of 4 0.20Down
Larval trachea898 1564 of 4 0.95None
Larval carcass939 694 of 4 0.99None
S2 cells (growing)1249 114 of 4 1.32Up
Whole fly949 194 of 4

Looking for CG5374-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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