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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5375-RA through 18771 annotations produced 1 hits



(CG5375):

Annotation Number : CG5375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032221
Gbrowse : chr2L:10328382-10330564 (-) // 100.0 //
Probeset : 1634570_at
Accessions : protein= NP_001097139; /// NP_609381;, nucleotide= NM_001103669; /// NM_135537;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032221.
BioGrid reports that CG5375 interacts with CG7405 CG8420 .
VDRC has 3 RNAi stocks for FBgn0032221 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain321 ± 54 of 420.80Up
Head171 ± 84 of 411.10Up
Eye443 ± 304 of 428.68Up
Thoracicoabdominal ganglion260 ± 94 of 416.80Up
Salivary gland5 ± 20 of 4 0.38Down
Crop2 ± 10 of 4 0.20Down
Midgut8 ± 11 of 4 0.50Down
Tubule4 ± 10 of 4 0.30Down
Hindgut4 ± 10 of 4 0.30Down
Heart3 ± 00 of 4 0.21Down
Fat body10 ± 31 of 4 0.66None
Ovary2 ± 10 of 4 0.10Down
Testis16 ± 24 of 4 1.10None
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca4 ± 00 of 4 0.26Down
Mated spermatheca5 ± 10 of 4 0.37Down
Adult carcass5 ± 10 of 4 0.40Down
Larval CNS165 ± 84 of 410.70Up
Larval Salivary gland6 ± 11 of 4 0.41Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut4 ± 01 of 4 0.27Down
Larval fat body6 ± 31 of 4 0.40None
Larval trachea7 ± 81 of 4 0.48None
Larval carcass3 ± 10 of 4 0.22Down
S2 cells (growing)17 ± 14 of 4 1.13None
Whole fly15 ± 24 of 4

Looking for CG5375-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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