FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5382-RB through 18771 annotations produced 1 hits

(CG5382):

Annotation Number : CG5382
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038950
Gbrowse : chr3R:18190260-18191703 (-) // 100.0 //
Probeset : 1637564_a_at
Accessions : protein= NP_732721;, nucleotide= NM_170003;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0038950.
BDGP gene expression has embryonic in situ data for CG5382: 11 pix of staining in 6 body parts.
BioGrid reports that CG5382 interacts with CG9432 .
VDRC has 1 RNAi stocks for FBgn0038950 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	115 ± 3	4 of 4	0.80	Down
Head	153 ± 6	4 of 4	1.10	None
Eye	130 ± 3	4 of 4	0.95	None
Thoracicoabdominal ganglion	110 ± 2	4 of 4	0.80	Down
Salivary gland	804 ± 17	4 of 4	5.86	Up
Crop	231 ± 10	4 of 4	1.70	Up
Midgut	211 ± 5	4 of 4	1.50	Up
Tubule	161 ± 10	4 of 4	1.20	Up
Hindgut	195 ± 1	4 of 4	1.40	Up
Heart	155 ± 7	4 of 4	1.13	None
Fat body	169 ± 7	4 of 4	1.23	Up
Ovary	172 ± 3	4 of 4	1.30	Up
Testis	66 ± 0	4 of 4	0.50	Down
Male accessory glands	647 ± 27	4 of 4	4.70	Up
Virgin spermatheca	243 ± 8	4 of 4	1.77	Up
Mated spermatheca	278 ± 19	4 of 4	2.03	Up
Adult carcass	162 ± 8	4 of 4	1.20	Up
Larval CNS	115 ± 2	4 of 4	0.84	Down
Larval Salivary gland	900 ± 44	4 of 4	6.55	Up
Larval midgut	191 ± 4	4 of 4	1.40	Up
Larval tubule	292 ± 10	4 of 4	2.10	Up
Larval hindgut	216 ± 4	4 of 4	1.58	Up
Larval fat body	185 ± 14	4 of 4	1.40	Up
Larval trachea	216 ± 40	4 of 4	1.58	Up
Larval carcass	164 ± 5	4 of 4	1.20	Up
S2 cells (growing)	211 ± 6	4 of 4	1.54	Up
Whole fly	137 ± 2	4 of 4

Looking for CG5382-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720