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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5383-RA through 18771 annotations produced 1 hits



phosphatidylserine receptor (PSR):

Annotation Number : CG5383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038948
Gbrowse : chr3R:18186497-18188255 (-) // 100.0 //
Probeset : 1640943_at
Accessions : protein= NP_651026;, nucleotide= NM_142769;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : "0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity
FlyMine data for FBgn0038948.
BioGrid reports that CG5383 interacts with CG6357 .
TRiP has 1 RNAi stocks for FBgn0038948 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038948 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 14 of 4 0.60Down
Head86 ± 54 of 4 0.70Down
Eye77 ± 44 of 4 0.62Down
Thoracicoabdominal ganglion71 ± 44 of 4 0.60Down
Salivary gland93 ± 54 of 4 0.75None
Crop129 ± 44 of 4 1.00None
Midgut118 ± 34 of 4 0.90None
Tubule153 ± 64 of 4 1.20Up
Hindgut116 ± 14 of 4 0.90None
Heart77 ± 74 of 4 0.62Down
Fat body83 ± 114 of 4 0.67Down
Ovary155 ± 54 of 4 1.20None
Testis63 ± 44 of 4 0.50Down
Male accessory glands99 ± 24 of 4 0.80None
Virgin spermatheca61 ± 44 of 4 0.49Down
Mated spermatheca65 ± 14 of 4 0.53Down
Adult carcass103 ± 24 of 4 0.80None
Larval CNS140 ± 74 of 4 1.12None
Larval Salivary gland117 ± 44 of 4 0.94None
Larval midgut101 ± 74 of 4 0.81None
Larval tubule83 ± 34 of 4 0.70Down
Larval hindgut146 ± 74 of 4 1.17None
Larval fat body68 ± 44 of 4 0.50Down
Larval trachea140 ± 64 of 4 1.12None
Larval carcass110 ± 44 of 4 0.88None
S2 cells (growing)168 ± 34 of 4 1.35Up
Whole fly124 ± 114 of 4

Looking for CG5383-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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