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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5392-RA through 18771 annotations produced 1 hits



reversion-inducing-cysteine-rich protein with kazal motifs (Reck):

Annotation Number : CG5392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036463
Gbrowse : chr3L:14994339-15007130 (-) // 100.0 //
Probeset : 1633480_at
Accessions : protein= NP_648733;, nucleotide= NM_140476;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0036463.
VDRC has 3 RNAi stocks for FBgn0036463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 34 of 4 2.90Up
Head52 ± 54 of 4 1.70Up
Eye48 ± 14 of 4 1.58Up
Thoracicoabdominal ganglion92 ± 64 of 4 3.00Up
Salivary gland32 ± 60 of 4 1.05None
Crop55 ± 44 of 4 1.80Up
Midgut32 ± 10 of 4 1.10None
Tubule26 ± 11 of 4 0.90Down
Hindgut36 ± 14 of 4 1.20Up
Heart86 ± 34 of 4 2.83Up
Fat body66 ± 44 of 4 2.18Up
Ovary13 ± 20 of 4 0.50Down
Testis21 ± 14 of 4 0.70Down
Male accessory glands27 ± 14 of 4 0.90None
Virgin spermatheca62 ± 24 of 4 2.03Up
Mated spermatheca44 ± 14 of 4 1.44Up
Adult carcass60 ± 64 of 4 2.00Up
Larval CNS222 ± 224 of 4 7.26Up
Larval Salivary gland30 ± 31 of 4 0.98None
Larval midgut68 ± 74 of 4 2.23Up
Larval tubule9 ± 31 of 4 0.30Down
Larval hindgut34 ± 24 of 4 1.14None
Larval fat body24 ± 42 of 4 0.80None
Larval trachea119 ± 174 of 4 3.91Up
Larval carcass84 ± 24 of 4 2.77Up
S2 cells (growing)336 ± 134 of 410.99Up
Whole fly30 ± 04 of 4

Looking for CG5392-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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