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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5393-RB through 18771 annotations produced 1 hits



tracheae defective (apt):

Annotation Number : CG5393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015903
Gbrowse : chr2R:19452419-19487223 (+) // 100.0 //
Probeset : 1625844_s_at
Accessions : protein= NP_477179; /// NP_477180; /// NP_726342; /// NP_726343; /// NP_726344;, nucleotide= NM_057831; /// NM_057832; /// NM_166609; /// NM_166610; /// NM_166611;
Pathway : open tracheal system // traceable author statement /// 0007507 // heart development // traceable author statement /// 0
Interpro : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0015903.
BDGP gene expression has embryonic in situ data for apt: 128 pix of staining in 44 body parts.
BioGrid reports that CG5393 interacts with CG5393 CG6766 CG8274 CG8997 CG9983 CG2189 CG2189 CG5829 .
TRiP has 1 RNAi stocks for FBgn0015903 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 13 of 4 0.20Down
Head15 02 of 4 0.20Down
Eye13 20 of 4 0.17Down
Thoracicoabdominal ganglion22 23 of 4 0.30Down
Salivary gland28 21 of 4 0.36Down
Crop16 11 of 4 0.20Down
Midgut40 14 of 4 0.50Down
Tubule33 13 of 4 0.40Down
Hindgut36 53 of 4 0.50Down
Heart15 42 of 4 0.20Down
Fat body22 43 of 4 0.28Down
Ovary48 14 of 4 0.60Down
Testis80 64 of 4 1.00None
Male accessory glands22 41 of 4 0.30Down
Virgin spermatheca25 34 of 4 0.33Down
Mated spermatheca30 34 of 4 0.39Down
Adult carcass30 43 of 4 0.40Down
Larval CNS38 84 of 4 0.50Down
Larval Salivary gland14 11 of 4 0.18Down
Larval midgut32 44 of 4 0.41Down
Larval tubule28 14 of 4 0.40Down
Larval hindgut29 34 of 4 0.38Down
Larval fat body34 52 of 4 0.40Down
Larval trachea90 124 of 4 1.17None
Larval carcass18 11 of 4 0.24Down
S2 cells (growing)20 12 of 4 0.26Down
Whole fly77 34 of 4

Looking for CG5393-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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