FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5399-RA through 18771 annotations produced 1 hits

(CG5399):

Annotation Number : CG5399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038353
Gbrowse : chr3R:11520991-11522282 (+) // 99.57 //
Probeset : 1630233_at
Accessions : protein= NP_650481;, nucleotide= NM_142224;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038353.
VDRC has 1 RNAi stocks for FBgn0038353 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.00	Down
Head	45 ± 24	2 of 4	0.00	Down
Eye	8 ± 8	1 of 4	0.01	Down
Thoracicoabdominal ganglion	6 ± 0	0 of 4	0.00	Down
Salivary gland	21 ± 3	0 of 4	0.01	Down
Crop	36 ± 14	2 of 4	0.00	Down
Midgut	5985 ± 178	4 of 4	4.10	Up
Tubule	3030 ± 545	4 of 4	2.10	Up
Hindgut	1892 ± 86	4 of 4	1.30	None
Heart	1739 ± 286	4 of 4	1.19	None
Fat body	69 ± 81	2 of 4	0.05	Down
Ovary	2 ± 1	0 of 4	0.00	Down
Testis	404 ± 16	4 of 4	0.30	Down
Male accessory glands	11 ± 2	1 of 4	0.00	Down
Virgin spermatheca	187 ± 36	4 of 4	0.13	Down
Mated spermatheca	539 ± 94	4 of 4	0.37	Down
Adult carcass	74 ± 7	4 of 4	0.10	Down
Larval CNS	17 ± 23	1 of 4	0.01	Down
Larval Salivary gland	2 ± 0	0 of 4	0.00	Down
Larval midgut	5958 ± 210	4 of 4	4.08	Up
Larval tubule	2636 ± 267	4 of 4	1.80	Up
Larval hindgut	1930 ± 87	4 of 4	1.32	None
Larval fat body	66 ± 12	4 of 4	0.00	Down
Larval trachea	68 ± 97	2 of 4	0.05	Down
Larval carcass	49 ± 11	1 of 4	0.03	Down
S2 cells (growing)	302 ± 13	4 of 4	0.21	Down
Whole fly	1459 ± 162	4 of 4

Looking for CG5399-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720