FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5400-RA through 18771 annotations produced 1 hits

Eclosion hormone (Eh):

Annotation Number : CG5400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000564
Gbrowse : chr3R:13272363-13275250 (-) // 100.0 //
Probeset : 1632960_at
Accessions : protein= NP_524386;, nucleotide= NM_079662;
Pathway : chitin-based cuticle // inferred from electronic annotation /// 0018990 // ecdysis
Interpro : chitin-based cuticle // non-traceable author statement /// 0030534 // adult behavior // non-traceable author statement"
FlyMine data for FBgn0000564.
TRiP has 1 RNAi stocks for FBgn0000564 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000564 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 7	2 of 4	5.60	None
Head	5 ± 4	1 of 4	2.10	None
Eye	2 ± 1	0 of 4	0.82	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.60	None
Salivary gland	6 ± 4	0 of 4	2.16	None
Crop	5 ± 2	0 of 4	1.90	None
Midgut	2 ± 1	0 of 4	1.00	None
Tubule	2 ± 0	0 of 4	0.80	None
Hindgut	3 ± 1	0 of 4	1.20	None
Heart	1 ± 0	0 of 4	0.50	None
Fat body	1 ± 0	0 of 4	0.56	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	1 ± 0	0 of 4	0.60	None
Male accessory glands	1 ± 0	0 of 4	0.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.53	None
Mated spermatheca	2 ± 0	0 of 4	0.77	None
Adult carcass	4 ± 0	0 of 4	1.50	None
Larval CNS	168 ± 27	4 of 4	58.98	Up
Larval Salivary gland	2 ± 1	0 of 4	0.83	None
Larval midgut	3 ± 1	0 of 4	1.32	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	0 of 4	0.37	None
Larval fat body	3 ± 1	0 of 4	1.30	None
Larval trachea	1 ± 1	0 of 4	0.56	None
Larval carcass	1 ± 0	0 of 4	0.43	None
S2 cells (growing)	1 ± 0	0 of 4	0.55	None
Whole fly	2 ± 1	0 of 4

Looking for CG5400-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720