FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5404-RA through 18771 annotations produced 1 hits

(CG5404):

Annotation Number : CG5404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038354
Gbrowse : chr3R:11530416-11534156 (+) // 100.0 //
Probeset : 1639014_at
Accessions : protein= NP_650482;, nucleotide= NM_142225;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015381 // high affinity sulfate transmembran
FlyMine data for FBgn0038354.
BDGP gene expression has embryonic in situ data for CG5404: 2 pix of staining in 1 body parts.
Homophila reports that CG5404 is a close match (2e-13) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 3 RNAi stocks for FBgn0038354 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	75 ± 2	4 of 4	8.70	Up
Head	26 ± 3	4 of 4	3.10	Up
Eye	10 ± 0	3 of 4	1.16	None
Thoracicoabdominal ganglion	71 ± 5	4 of 4	8.20	Up
Salivary gland	4 ± 2	0 of 4	0.56	None
Crop	2 ± 1	0 of 4	0.30	Down
Midgut	4 ± 1	0 of 4	0.50	None
Tubule	51 ± 7	4 of 4	5.90	Up
Hindgut	245 ± 1	4 of 4	28.20	Up
Heart	1 ± 1	0 of 4	0.19	Down
Fat body	10 ± 4	1 of 4	1.18	None
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	2 ± 1	0 of 4	0.30	Down
Male accessory glands	5 ± 2	0 of 4	0.60	None
Virgin spermatheca	5 ± 2	0 of 4	0.57	None
Mated spermatheca	3 ± 1	0 of 4	0.44	Down
Adult carcass	2 ± 1	0 of 4	0.20	Down
Larval CNS	32 ± 8	4 of 4	3.73	Up
Larval Salivary gland	2 ± 1	0 of 4	0.24	Down
Larval midgut	2 ± 0	0 of 4	0.23	Down
Larval tubule	51 ± 3	4 of 4	5.90	Up
Larval hindgut	144 ± 14	4 of 4	16.58	Up
Larval fat body	1 ± 0	0 of 4	0.20	Down
Larval trachea	2 ± 3	0 of 4	0.34	Down
Larval carcass	25 ± 5	4 of 4	2.90	Up
S2 cells (growing)	1 ± 0	0 of 4	0.15	Down
Whole fly	8 ± 1	3 of 4

Looking for CG5404-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720