FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5409-RA through 18771 annotations produced 1 hits

Actin-related protein 53D (Arp53D):

Annotation Number : CG5409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011743
Gbrowse : chr2R:12661924-12663055 (+) // 100.0 //
Probeset : 1636039_at
Accessions : protein= NP_477037;, nucleotide= NM_057689;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskelet
FlyMine data for FBgn0011743.
Homophila reports that CG5409 is a close match (6e-144) to human gene ACTA1;ASMA;CFTD1;NEM1;NEM3 (NP_001091), a gene associated with Myopathy, actin, congenital, with cores (3);Myopathy, actin, congenital, with excess of thin myofilaments, 161800 (3);Myopathy, congenital, with fiber-type disporportion 1, 255310 (3);Myopathy, nemaline, 3, 161800 (3).
VDRC has 3 RNAi stocks for FBgn0011743 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	0.10	Down
Head	2 ± 0	0 of 4	0.00	Down
Eye	2 ± 0	0 of 4	0.04	Down
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	Down
Salivary gland	11 ± 4	1 of 4	0.18	Down
Crop	3 ± 1	0 of 4	0.00	Down
Midgut	9 ± 1	0 of 4	0.10	Down
Tubule	5 ± 0	0 of 4	0.10	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.02	Down
Fat body	2 ± 1	0 of 4	0.04	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	930 ± 20	4 of 4	14.20	Up
Male accessory glands	3 ± 1	0 of 4	0.10	Down
Virgin spermatheca	2 ± 0	0 of 4	0.04	Down
Mated spermatheca	3 ± 1	0 of 4	0.06	Down
Adult carcass	10 ± 1	2 of 4	0.20	Down
Larval CNS	4 ± 3	1 of 4	0.07	Down
Larval Salivary gland	3 ± 1	0 of 4	0.05	Down
Larval midgut	4 ± 1	0 of 4	0.07	Down
Larval tubule	4 ± 1	1 of 4	0.10	Down
Larval hindgut	3 ± 0	0 of 4	0.05	Down
Larval fat body	219 ± 115	4 of 4	3.40	None
Larval trachea	6 ± 6	2 of 4	0.11	Down
Larval carcass	3 ± 1	0 of 4	0.06	Down
S2 cells (growing)	2 ± 1	0 of 4	0.04	Down
Whole fly	65 ± 2	4 of 4

Looking for CG5409-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720