FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5410-RD through 18771 annotations produced 1 hits

Mitochondrial Rho (Miro):

Annotation Number : CG5410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039140
Gbrowse : chr3R:19860082-19863644 (-) // 100.0 //
Probeset : 1623553_a_at
Accessions : protein= NP_651205; /// NP_732936;, nucleotide= NM_142948; /// NM_170111;
Pathway : microtubule-mediated // inferred from mutant phenotype /// 0047497 // mitochondrion transport along microtubule // infe
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
FlyMine data for FBgn0039140.
BDGP gene expression has embryonic in situ data for CG5410: 17 pix of staining in 10 body parts.
BioGrid reports that CG5410 interacts with CG7818 CG9653 CG6985 CG8601 .
TRiP has 1 RNAi stocks for FBgn0039140 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039140 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	365 ± 16	4 of 4	1.50	Up
Head	218 ± 17	4 of 4	0.90	None
Eye	192 ± 5	4 of 4	0.80	Down
Thoracicoabdominal ganglion	391 ± 8	4 of 4	1.60	Up
Salivary gland	285 ± 7	4 of 4	1.19	Up
Crop	311 ± 14	4 of 4	1.30	Up
Midgut	235 ± 9	4 of 4	1.00	None
Tubule	379 ± 18	4 of 4	1.60	Up
Hindgut	267 ± 9	4 of 4	1.10	None
Heart	258 ± 5	4 of 4	1.08	None
Fat body	263 ± 19	4 of 4	1.10	None
Ovary	363 ± 3	4 of 4	1.50	Up
Testis	158 ± 2	4 of 4	0.70	Down
Male accessory glands	311 ± 10	4 of 4	1.30	Up
Virgin spermatheca	544 ± 37	4 of 4	2.28	Up
Mated spermatheca	491 ± 25	4 of 4	2.05	Up
Adult carcass	260 ± 17	4 of 4	1.10	None
Larval CNS	342 ± 34	4 of 4	1.43	Up
Larval Salivary gland	220 ± 14	4 of 4	0.92	None
Larval midgut	313 ± 15	4 of 4	1.31	Up
Larval tubule	209 ± 6	4 of 4	0.90	None
Larval hindgut	285 ± 13	4 of 4	1.19	Up
Larval fat body	215 ± 12	4 of 4	0.90	None
Larval trachea	262 ± 18	4 of 4	1.10	None
Larval carcass	246 ± 10	4 of 4	1.03	None
S2 cells (growing)	246 ± 6	4 of 4	1.03	None
Whole fly	239 ± 10	4 of 4

Looking for CG5410-RD. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720