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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5412-RA through 18771 annotations produced 1 hits



(CG5412):

Annotation Number : CG5412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038806
Gbrowse : chr3R:16402729-16403853 (+) // 100.0 //
Probeset : 1638237_at
Accessions : protein= NP_650895;, nucleotide= NM_142638;
FlyMine data for FBgn0038806.
VDRC has 4 RNAi stocks for FBgn0038806 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 44 of 4 1.80Up
Head48 ± 34 of 4 0.70Down
Eye56 ± 34 of 4 0.83None
Thoracicoabdominal ganglion77 ± 14 of 4 1.10None
Salivary gland32 ± 50 of 4 0.48Down
Crop42 ± 43 of 4 0.60Down
Midgut40 ± 20 of 4 0.60Down
Tubule30 ± 20 of 4 0.50Down
Hindgut43 ± 23 of 4 0.60Down
Heart45 ± 34 of 4 0.67Down
Fat body51 ± 124 of 4 0.77None
Ovary106 ± 44 of 4 1.60Up
Testis53 ± 44 of 4 0.80None
Male accessory glands40 ± 33 of 4 0.60Down
Virgin spermatheca39 ± 13 of 4 0.58Down
Mated spermatheca47 ± 34 of 4 0.69Down
Adult carcass48 ± 42 of 4 0.70Down
Larval CNS68 ± 44 of 4 1.01None
Larval Salivary gland47 ± 22 of 4 0.70Down
Larval midgut28 ± 30 of 4 0.42Down
Larval tubule47 ± 33 of 4 0.70Down
Larval hindgut40 ± 04 of 4 0.59Down
Larval fat body37 ± 32 of 4 0.60Down
Larval trachea60 ± 44 of 4 0.89None
Larval carcass33 ± 21 of 4 0.49Down
S2 cells (growing)68 ± 14 of 4 1.01None
Whole fly67 ± 34 of 4

Looking for CG5412-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime