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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5421-RA through 18771 annotations produced 1 hits



(CG5421):

Annotation Number : CG5421
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032434
Gbrowse : chr2L:12446402-12448113 (-) // 100.0 //
Probeset : 1641209_at
Accessions : protein= NP_609569;, nucleotide= NM_135725;
Pathway : "0033180 // proton-transporting V-type ATPase
Interpro : V1 domain // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /
FlyMine data for FBgn0032434.
VDRC has 1 RNAi stocks for FBgn0032434 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head2 10 of 4 1.20None
Eye3 10 of 4 1.88None
Thoracicoabdominal ganglion5 20 of 4 3.00None
Salivary gland1 00 of 4 1.00None
Crop2 10 of 4 1.70None
Midgut3 10 of 4 1.80None
Tubule1 00 of 4 0.90None
Hindgut0 00 of 4 0.40None
Heart1 00 of 4 1.06None
Fat body1 10 of 4 0.69None
Ovary0 00 of 4 0.30None
Testis70 34 of 441.20Up
Male accessory glands2 00 of 4 1.30None
Virgin spermatheca0 00 of 4 0.41None
Mated spermatheca0 00 of 4 0.37None
Adult carcass2 10 of 4 1.30None
Larval CNS0 00 of 4 0.34None
Larval Salivary gland1 00 of 4 0.76None
Larval midgut3 10 of 4 1.85None
Larval tubule2 10 of 4 1.40None
Larval hindgut0 00 of 4 0.22None
Larval fat body17 31 of 410.40Up
Larval trachea2 20 of 4 1.18None
Larval carcass1 00 of 4 0.99None
S2 cells (growing)0 00 of 4 0.44None
Whole fly1 00 of 4

Looking for CG5421-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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