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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5422-RD through 18771 annotations produced 1 hits



RNA-binding protein 12 (Rox8):

Annotation Number : CG5422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005649
Gbrowse : chr3R:19868923-19873987 (-) // 100.0 //
Probeset : 1639783_s_at
Accessions : protein= NP_732942; /// NP_732943; /// NP_732944; /// NP_732945;, nucleotide= NM_170116; /// NM_170117; /// NM_170118; /// NM_170119;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0005649.
BDGP gene expression has embryonic in situ data for Rox8: 15 pix of staining in 6 body parts.
BioGrid reports that CG5422 interacts with CG7021 CG7347 CG7809 CG8597 CG8994 CG9106 CG9184 .
TRiP has 2 RNAi stocks for FBgn0005649 available for purchase.
VDRC has 4 RNAi stocks for FBgn0005649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 154 of 4 0.70Down
Head143 64 of 4 0.50Down
Eye339 114 of 4 1.18Up
Thoracicoabdominal ganglion185 94 of 4 0.60Down
Salivary gland135 54 of 4 0.47Down
Crop211 54 of 4 0.70Down
Midgut131 94 of 4 0.50Down
Tubule161 64 of 4 0.60Down
Hindgut189 134 of 4 0.70Down
Heart294 144 of 4 1.02None
Fat body175 174 of 4 0.61Down
Ovary704 204 of 4 2.40Up
Testis103 64 of 4 0.40Down
Male accessory glands110 54 of 4 0.40Down
Virgin spermatheca229 84 of 4 0.79Down
Mated spermatheca233 94 of 4 0.81Down
Adult carcass165 104 of 4 0.60Down
Larval CNS385 94 of 4 1.34Up
Larval Salivary gland276 54 of 4 0.96None
Larval midgut158 64 of 4 0.55Down
Larval tubule335 64 of 4 1.20Up
Larval hindgut229 64 of 4 0.79Down
Larval fat body189 154 of 4 0.70Down
Larval trachea349 374 of 4 1.21Up
Larval carcass244 154 of 4 0.85None
S2 cells (growing)379 84 of 4 1.31Up
Whole fly288 124 of 4

Looking for CG5422-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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