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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5427-RA through 18771 annotations produced 1 hits



Organic anion transporting polypeptide 33Ea (Oatp33Ea):

Annotation Number : CG5427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032433
Gbrowse : chr2L:12441399-12445911 (-) // 100.0 //
Probeset : 1636811_at
Accessions : protein= NP_609568;, nucleotide= NM_135724;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity /
FlyMine data for FBgn0032433.
VDRC has 3 RNAi stocks for FBgn0032433 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 44 of 4 0.90None
Head32 14 of 4 0.40Down
Eye9 04 of 4 0.10Down
Thoracicoabdominal ganglion95 84 of 4 1.00None
Salivary gland16 31 of 4 0.18Down
Crop9 00 of 4 0.10Down
Midgut987 84 of 410.80Up
Tubule14 33 of 4 0.20Down
Hindgut166 74 of 4 1.80Up
Heart5 01 of 4 0.06Down
Fat body13 12 of 4 0.15Down
Ovary4 11 of 4 0.00Down
Testis10 04 of 4 0.10Down
Male accessory glands12 22 of 4 0.10Down
Virgin spermatheca17 24 of 4 0.19Down
Mated spermatheca16 14 of 4 0.18Down
Adult carcass20 23 of 4 0.20Down
Larval CNS90 194 of 4 0.99None
Larval Salivary gland7 12 of 4 0.08Down
Larval midgut807 174 of 4 8.80Up
Larval tubule11 12 of 4 0.10Down
Larval hindgut138 114 of 4 1.51None
Larval fat body25 34 of 4 0.30Down
Larval trachea5 21 of 4 0.06Down
Larval carcass8 21 of 4 0.09Down
S2 cells (growing)5 01 of 4 0.06Down
Whole fly91 144 of 4

Looking for CG5427-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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