FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5444-RA through 18771 annotations produced 2 hits

chr3L:16106363-16113820 (+) // 99.81 // (TBP-associated factor 110):

Annotation Number : CG5444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640309_s_at
Accessions : protein= , nucleotide= NP_001137958; /// NP_001163453; /// NP_524102; /// NP_730109; /// NP_788511; /// NP_996101;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred fro
Interpro : DNA-dependent // inferred from physical interaction /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG5444 interacts with CG3166 CG2845 CG9375 CG9375 CG9375 CG9375 CG18085 CG33261 CG17603 CG17603 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	203 ± 3	4 of 4	2.50	Up
Head	60 ± 5	4 of 4	0.70	Down
Eye	95 ± 5	4 of 4	1.18	None
Thoracicoabdominal ganglion	112 ± 14	4 of 4	1.40	None
Salivary gland	62 ± 3	4 of 4	0.77	Down
Crop	67 ± 5	4 of 4	0.80	None
Midgut	67 ± 2	4 of 4	0.80	Down
Tubule	25 ± 1	4 of 4	0.30	Down
Hindgut	76 ± 5	4 of 4	0.90	None
Heart	93 ± 5	4 of 4	1.15	None
Fat body	77 ± 10	4 of 4	0.96	None
Ovary	137 ± 4	4 of 4	1.70	Up
Testis	30 ± 5	4 of 4	0.40	Down
Male accessory glands	118 ± 4	4 of 4	1.50	Up
Virgin spermatheca	72 ± 5	4 of 4	0.89	None
Mated spermatheca	64 ± 6	4 of 4	0.79	None
Adult carcass	65 ± 3	4 of 4	0.80	Down
Larval CNS	170 ± 8	4 of 4	2.10	Up
Larval Salivary gland	81 ± 5	4 of 4	1.00	None
Larval midgut	55 ± 3	4 of 4	0.68	Down
Larval tubule	63 ± 4	4 of 4	0.80	Down
Larval hindgut	61 ± 2	4 of 4	0.75	Down
Larval fat body	73 ± 4	4 of 4	0.90	None
Larval trachea	148 ± 23	4 of 4	1.83	Up
Larval carcass	41 ± 5	4 of 4	0.52	Down
S2 cells (growing)	240 ± 7	4 of 4	2.97	Up
Whole fly	81 ± 3	4 of 4

chr3L:16106363-16114460 (+) // 99.91 // (TBP-associated factor 110):

Annotation Number : CG5444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624037_s_at
Accessions : protein= , nucleotide= NP_001137958; /// NP_001163453; /// NP_524102; /// NP_730109; /// NP_788511; /// NP_996101;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred fro
Interpro : DNA-dependent // inferred from physical interaction /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG5444 interacts with CG3166 CG2845 CG9375 CG9375 CG9375 CG9375 CG18085 CG33261 CG17603 CG17603 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	641 ± 24	4 of 4	3.80	Up
Head	244 ± 12	4 of 4	1.40	Up
Eye	288 ± 22	4 of 4	1.69	Up
Thoracicoabdominal ganglion	413 ± 13	4 of 4	2.40	Up
Salivary gland	268 ± 15	4 of 4	1.58	Up
Crop	248 ± 12	4 of 4	1.50	Up
Midgut	155 ± 3	4 of 4	0.90	None
Tubule	133 ± 5	4 of 4	0.80	Down
Hindgut	184 ± 2	4 of 4	1.10	None
Heart	172 ± 3	4 of 4	1.01	None
Fat body	262 ± 34	4 of 4	1.54	Up
Ovary	267 ± 3	4 of 4	1.60	Up
Testis	24 ± 1	4 of 4	0.10	Down
Male accessory glands	368 ± 5	4 of 4	2.20	Up
Virgin spermatheca	236 ± 23	4 of 4	1.39	None
Mated spermatheca	240 ± 15	4 of 4	1.41	Up
Adult carcass	170 ± 7	4 of 4	1.00	None
Larval CNS	672 ± 104	4 of 4	3.95	Up
Larval Salivary gland	462 ± 27	4 of 4	2.72	Up
Larval midgut	173 ± 5	4 of 4	1.02	None
Larval tubule	190 ± 7	4 of 4	1.10	None
Larval hindgut	241 ± 11	4 of 4	1.42	Up
Larval fat body	190 ± 12	4 of 4	1.10	None
Larval trachea	325 ± 7	4 of 4	1.91	Up
Larval carcass	228 ± 7	4 of 4	1.34	Up
S2 cells (growing)	450 ± 11	4 of 4	2.65	Up
Whole fly	170 ± 7	4 of 4

Looking for CG5444-RA. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720