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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5452-RA through 18771 annotations produced 1 hits



deoxyribonucleoside kinase (dnk):

Annotation Number : CG5452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022338
Gbrowse : chr3R:14807122-14808500 (+) // 100.0 //
Probeset : 1627691_at
Accessions : protein= NP_524399;, nucleotide= NM_079675;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006165 // nucleoside diphosph
FlyMine data for FBgn0022338.
BDGP gene expression has embryonic in situ data for dnk: 19 pix of staining in 19 body parts.
Homophila reports that CG5452 is a close match (2e-11) to human gene DGUOK;DGK (NP_550440), a gene associated with Mitochondrial DNA-depletion syndrome, hepatocerebral form, 251880 (3).
BioGrid reports that CG5452 interacts with CG9670 CG8609 CG9933 .
TRiP has 1 RNAi stocks for FBgn0022338 available for purchase.
VDRC has 2 RNAi stocks for FBgn0022338 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 34 of 4 0.20Down
Head102 ± 54 of 4 0.20Down
Eye117 ± 84 of 4 0.17Down
Thoracicoabdominal ganglion125 ± 44 of 4 0.20Down
Salivary gland117 ± 104 of 4 0.17Down
Crop92 ± 74 of 4 0.10Down
Midgut89 ± 54 of 4 0.10Down
Tubule81 ± 74 of 4 0.10Down
Hindgut97 ± 34 of 4 0.10Down
Heart77 ± 14 of 4 0.12Down
Fat body83 ± 44 of 4 0.12Down
Ovary1375 ± 384 of 4 2.00Up
Testis81 ± 44 of 4 0.10Down
Male accessory glands71 ± 64 of 4 0.10Down
Virgin spermatheca65 ± 14 of 4 0.10Down
Mated spermatheca79 ± 24 of 4 0.12Down
Adult carcass93 ± 64 of 4 0.10Down
Larval CNS367 ± 254 of 4 0.54Down
Larval Salivary gland378 ± 124 of 4 0.56Down
Larval midgut65 ± 74 of 4 0.10Down
Larval tubule62 ± 14 of 4 0.10Down
Larval hindgut150 ± 94 of 4 0.22Down
Larval fat body56 ± 34 of 4 0.10Down
Larval trachea252 ± 514 of 4 0.37Down
Larval carcass207 ± 94 of 4 0.31Down
S2 cells (growing)830 ± 214 of 4 1.23Up
Whole fly675 ± 194 of 4

Looking for CG5452-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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