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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5458-RA through 18771 annotations produced 1 hits



(CG5458):

Annotation Number : CG5458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032478
Gbrowse : chr2L:13183449-13184875 (+) // 99.45 //
Probeset : 1628079_at
Accessions : protein= NP_609609;, nucleotide= NM_135765;
FlyMine data for FBgn0032478.
BDGP gene expression has embryonic in situ data for CG5458: 2 pix of staining in 1 body parts.
Homophila reports that CG5458 is a close match (2e-11) to human gene ALS2;ALSJ;IAHSP;PLSJ (NP_065970), a gene associated with Amyotrophic lateral sclerosis, juvenile, 205100 (3);Primary lateral sclerosis, juvenile, 606353 (3);Spastic paralysis, infantile onset ascending, 607225 (3).
VDRC has 3 RNAi stocks for FBgn0032478 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.10Down
Head3 00 of 4 0.10Down
Eye7 12 of 4 0.12Down
Thoracicoabdominal ganglion9 32 of 4 0.20Down
Salivary gland14 10 of 4 0.25Down
Crop4 10 of 4 0.10Down
Midgut7 21 of 4 0.10Down
Tubule10 02 of 4 0.20Down
Hindgut6 10 of 4 0.10Down
Heart3 11 of 4 0.06Down
Fat body9 51 of 4 0.16Down
Ovary2 00 of 4 0.00Down
Testis826 124 of 414.10Up
Male accessory glands7 21 of 4 0.10Down
Virgin spermatheca21 24 of 4 0.36Down
Mated spermatheca33 94 of 4 0.58None
Adult carcass4 10 of 4 0.10Down
Larval CNS3 11 of 4 0.06Down
Larval Salivary gland7 20 of 4 0.12Down
Larval midgut4 10 of 4 0.08Down
Larval tubule8 22 of 4 0.10Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body105 513 of 4 1.80None
Larval trachea5 40 of 4 0.10Down
Larval carcass2 00 of 4 0.05Down
S2 cells (growing)6 02 of 4 0.11Down
Whole fly58 14 of 4

Looking for CG5458-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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