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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5468-RA through 18771 annotations produced 1 hits



CG5468 (TwdlM):

Annotation Number : CG5468
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039434
Gbrowse : chr3R:22444844-22445953 (+) // 100.0 //
Probeset : 1630473_at
Accessions : protein= NP_651484;, nucleotide= NM_143227;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039434.
BDGP gene expression has embryonic in situ data for CG5468: 11 pix of staining in 3 body parts.
BioGrid reports that CG5468 interacts with CG7763 CG8368 CG8614 CG9163 CG9368 CG9975 .
VDRC has 2 RNAi stocks for FBgn0039434 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00None
Head5 ± 20 of 4 0.10None
Eye1 ± 00 of 4 0.02None
Thoracicoabdominal ganglion5 ± 10 of 4 0.10None
Salivary gland12 ± 41 of 4 0.18None
Crop18 ± 20 of 4 0.30None
Midgut8 ± 20 of 4 0.10None
Tubule5 ± 10 of 4 0.10Down
Hindgut12 ± 40 of 4 0.20None
Heart6 ± 20 of 4 0.10None
Fat body9 ± 50 of 4 0.14None
Ovary3 ± 10 of 4 0.00None
Testis5 ± 10 of 4 0.10None
Male accessory glands2 ± 00 of 4 0.00None
Virgin spermatheca6 ± 20 of 4 0.10None
Mated spermatheca2 ± 00 of 4 0.03None
Adult carcass12 ± 50 of 4 0.20None
Larval CNS4 ± 20 of 4 0.07None
Larval Salivary gland8 ± 10 of 4 0.12None
Larval midgut5 ± 30 of 4 0.08None
Larval tubule6 ± 20 of 4 0.10None
Larval hindgut7 ± 20 of 4 0.11None
Larval fat body12 ± 50 of 4 0.20None
Larval trachea8 ± 20 of 4 0.12None
Larval carcass11 ± 30 of 4 0.17None
S2 cells (growing)4 ± 10 of 4 0.07None
Whole fly69 ± 312 of 4

Looking for CG5468-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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