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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5473-RA through 18771 annotations produced 1 hits



SP2637 (SP2637):

Annotation Number : CG5473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034371
Gbrowse : chr2R:14528527-14545705 (-) // 100.0 //
Probeset : 1638485_s_at
Accessions : protein= NP_001163199; /// NP_001163200; /// NP_611355; /// NP_725811;, nucleotide= NM_001169728; /// NM_001169729; /// NM_137511; /// NM_166300;
Interpro : 0004067 // asparaginase activity // inferred from sequence or structural similarity /// 0004067 // asparaginase activity
FlyMine data for FBgn0034371.
BDGP gene expression has embryonic in situ data for SP2637: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034371 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 ± 44 of 4 2.00Up
Head183 ± 94 of 4 1.40Up
Eye89 ± 34 of 4 0.69None
Thoracicoabdominal ganglion266 ± 124 of 4 2.10Up
Salivary gland136 ± 64 of 4 1.06None
Crop466 ± 144 of 4 3.60Up
Midgut48 ± 23 of 4 0.40Down
Tubule49 ± 44 of 4 0.40Down
Hindgut282 ± 34 of 4 2.20Up
Heart225 ± 114 of 4 1.75Up
Fat body256 ± 734 of 4 1.99Up
Ovary107 ± 24 of 4 0.80None
Testis71 ± 24 of 4 0.60Down
Male accessory glands40 ± 23 of 4 0.30Down
Virgin spermatheca84 ± 64 of 4 0.66Down
Mated spermatheca80 ± 84 of 4 0.62Down
Adult carcass243 ± 154 of 4 1.90Up
Larval CNS132 ± 154 of 4 1.03None
Larval Salivary gland86 ± 84 of 4 0.67Down
Larval midgut35 ± 34 of 4 0.27Down
Larval tubule64 ± 24 of 4 0.50Down
Larval hindgut57 ± 24 of 4 0.45Down
Larval fat body157 ± 284 of 4 1.20None
Larval trachea55 ± 134 of 4 0.43Down
Larval carcass57 ± 24 of 4 0.45Down
S2 cells (growing)168 ± 24 of 4 1.31None
Whole fly128 ± 134 of 4

Looking for CG5473-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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