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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5475-RA through 18771 annotations produced 1 hits



p38a MAP kinase (Mpk2):

Annotation Number : CG5475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015765
Gbrowse : chr3R:19976137-19977996 (-) // 99.7 //
Probeset : 1636173_s_at
Accessions : protein= NP_001163711; /// NP_477163; /// NP_732959;, nucleotide= NM_001170240; /// NM_057815; /// NM_170126;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0015765.
BDGP gene expression has embryonic in situ data for Mpk2: 35 pix of staining in 3 body parts.
Homophila reports that CG5475 is a close match (3e-11) to human gene FGFR4 (NP_998812), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG5475 interacts with CG5825 CG32528 .
TRiP has 3 RNAi stocks for FBgn0015765 available for purchase.
VDRC has 4 RNAi stocks for FBgn0015765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 24 of 4 0.30Down
Head96 ± 34 of 4 0.60Down
Eye86 ± 74 of 4 0.56Down
Thoracicoabdominal ganglion50 ± 14 of 4 0.30Down
Salivary gland180 ± 184 of 4 1.16None
Crop441 ± 124 of 4 2.90Up
Midgut343 ± 124 of 4 2.20Up
Tubule107 ± 34 of 4 0.70Down
Hindgut261 ± 114 of 4 1.70Up
Heart217 ± 154 of 4 1.40Up
Fat body130 ± 134 of 4 0.84Down
Ovary260 ± 24 of 4 1.70Up
Testis165 ± 74 of 4 1.10None
Male accessory glands98 ± 34 of 4 0.60Down
Virgin spermatheca81 ± 84 of 4 0.53Down
Mated spermatheca92 ± 24 of 4 0.60Down
Adult carcass133 ± 64 of 4 0.90Down
Larval CNS109 ± 84 of 4 0.71Down
Larval Salivary gland205 ± 94 of 4 1.33Up
Larval midgut358 ± 344 of 4 2.32Up
Larval tubule220 ± 74 of 4 1.40Up
Larval hindgut344 ± 74 of 4 2.23Up
Larval fat body190 ± 104 of 4 1.20Up
Larval trachea311 ± 274 of 4 2.01Up
Larval carcass241 ± 54 of 4 1.56Up
S2 cells (growing)365 ± 114 of 4 2.37Up
Whole fly154 ± 44 of 4

Looking for CG5475-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime