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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5484-RA through 18771 annotations produced 1 hits



(CG5484):

Annotation Number : CG5484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039450
Gbrowse : chr3R:22543569-22545529 (+) // 100.0 //
Probeset : 1638670_a_at
Accessions : protein= NP_651498; /// NP_733163; /// NP_733164;, nucleotide= NM_143241; /// NM_170284; /// NM_170285;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039450.
BioGrid reports that CG5484 interacts with CG7222 CG6720 .
VDRC has 2 RNAi stocks for FBgn0039450 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain128 34 of 4 0.60Down
Head143 34 of 4 0.70Down
Eye169 124 of 4 0.83None
Thoracicoabdominal ganglion126 74 of 4 0.60Down
Salivary gland1145 224 of 4 5.59Up
Crop210 24 of 4 1.00None
Midgut297 94 of 4 1.50Up
Tubule358 144 of 4 1.80Up
Hindgut180 34 of 4 0.90Down
Heart235 94 of 4 1.15Up
Fat body225 454 of 4 1.10None
Ovary268 44 of 4 1.30Up
Testis373 84 of 4 1.80Up
Male accessory glands810 234 of 4 4.00Up
Virgin spermatheca362 64 of 4 1.77Up
Mated spermatheca398 154 of 4 1.95Up
Adult carcass223 44 of 4 1.10Up
Larval CNS184 124 of 4 0.90None
Larval Salivary gland1595 1154 of 4 7.79Up
Larval midgut209 34 of 4 1.02None
Larval tubule309 34 of 4 1.50Up
Larval hindgut256 144 of 4 1.25Up
Larval fat body307 204 of 4 1.50Up
Larval trachea305 494 of 4 1.49Up
Larval carcass288 174 of 4 1.41Up
S2 cells (growing)433 34 of 4 2.12Up
Whole fly204 54 of 4

Looking for CG5484-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime