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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5485-RA through 18771 annotations produced 1 hits



Prestin (Prestin):

Annotation Number : CG5485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036770
Gbrowse : chr3L:17892368-17894853 (-) // 100.0 //
Probeset : 1624752_at
Accessions : protein= NP_649024;, nucleotide= NM_140767;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmemb
FlyMine data for FBgn0036770.
Homophila reports that CG5485 is a close match (5e-40) to human gene DFNB61;PRES;SLC26A5 (NP_996768), a gene associated with Deafness, autosomal recessive 61 (3).
VDRC has 1 RNAi stocks for FBgn0036770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 44 of 4 0.60Down
Head45 ± 24 of 4 0.50Down
Eye31 ± 14 of 4 0.34Down
Thoracicoabdominal ganglion56 ± 64 of 4 0.60Down
Salivary gland75 ± 84 of 4 0.82None
Crop91 ± 54 of 4 1.00None
Midgut373 ± 294 of 4 4.00Up
Tubule339 ± 344 of 4 3.70Up
Hindgut266 ± 54 of 4 2.90Up
Heart47 ± 24 of 4 0.52Down
Fat body68 ± 94 of 4 0.74None
Ovary160 ± 34 of 4 1.70Up
Testis37 ± 24 of 4 0.40Down
Male accessory glands12 ± 11 of 4 0.10Down
Virgin spermatheca12 ± 20 of 4 0.13Down
Mated spermatheca29 ± 33 of 4 0.32Down
Adult carcass89 ± 74 of 4 1.00None
Larval CNS26 ± 44 of 4 0.29Down
Larval Salivary gland50 ± 64 of 4 0.55Down
Larval midgut313 ± 234 of 4 3.39Up
Larval tubule318 ± 234 of 4 3.40Up
Larval hindgut509 ± 304 of 4 5.50Up
Larval fat body40 ± 64 of 4 0.40Down
Larval trachea44 ± 44 of 4 0.48Down
Larval carcass157 ± 94 of 4 1.71Up
S2 cells (growing)230 ± 54 of 4 2.48Up
Whole fly92 ± 94 of 4

Looking for CG5485-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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