FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5486-RA through 18771 annotations produced 1 hits

Ubiquitin-specific protease 64E (Ubp64E):

Annotation Number : CG5486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016756
Gbrowse : chr3L:5746085-5754602 (+) // 100.0 //
Probeset : 1624727_s_at
Accessions : protein= NP_523937; /// NP_729087; /// NP_996001;, nucleotide= NM_079213; /// NM_168129; /// NM_206279;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004221 // ubiquitin thiolesteras
FlyMine data for FBgn0016756.
BDGP gene expression has embryonic in situ data for Ubp64E: 12 pix of staining in 8 body parts.
Homophila reports that CG5486 is a close match (3e-33) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
BioGrid reports that CG5486 interacts with CG7484 CG4354 .
TRiP has 1 RNAi stocks for FBgn0016756 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016756 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	293 ± 3	4 of 4	1.20	Up
Head	220 ± 14	4 of 4	0.90	None
Eye	251 ± 5	4 of 4	1.07	None
Thoracicoabdominal ganglion	306 ± 5	4 of 4	1.30	Up
Salivary gland	298 ± 8	4 of 4	1.26	Up
Crop	974 ± 37	4 of 4	4.10	Up
Midgut	238 ± 7	4 of 4	1.00	None
Tubule	334 ± 15	4 of 4	1.40	Up
Hindgut	514 ± 13	4 of 4	2.20	Up
Heart	433 ± 33	4 of 4	1.83	Up
Fat body	144 ± 11	4 of 4	0.61	Down
Ovary	195 ± 12	4 of 4	0.80	Down
Testis	752 ± 18	4 of 4	3.20	Up
Male accessory glands	367 ± 13	4 of 4	1.60	Up
Virgin spermatheca	161 ± 6	4 of 4	0.68	Down
Mated spermatheca	210 ± 10	4 of 4	0.89	None
Adult carcass	349 ± 13	4 of 4	1.50	Up
Larval CNS	252 ± 44	4 of 4	1.07	None
Larval Salivary gland	316 ± 15	4 of 4	1.34	Up
Larval midgut	238 ± 16	4 of 4	1.01	None
Larval tubule	234 ± 9	4 of 4	1.00	None
Larval hindgut	458 ± 27	4 of 4	1.94	Up
Larval fat body	156 ± 17	4 of 4	0.70	Down
Larval trachea	302 ± 46	4 of 4	1.28	None
Larval carcass	620 ± 6	4 of 4	2.63	Up
S2 cells (growing)	285 ± 5	4 of 4	1.21	Up
Whole fly	236 ± 8	4 of 4

Looking for CG5486-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720