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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5489-RB through 18771 annotations produced 1 hits



Autophagy-specific gene 7 (Atg7):

Annotation Number : CG5489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034366
Gbrowse : chr2R:14507960-14512553 (-) // 100.0 //
Probeset : 1637240_a_at
Accessions : protein= NP_611350; /// NP_725809;, nucleotide= NM_137506; /// NM_166298;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0034366.
TRiP has 2 RNAi stocks for FBgn0034366 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034366 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 14 of 4 0.80Down
Head57 44 of 4 0.80Down
Eye40 24 of 4 0.54Down
Thoracicoabdominal ganglion64 34 of 4 0.90None
Salivary gland116 14 of 4 1.55Up
Crop107 34 of 4 1.40Up
Midgut44 24 of 4 0.60Down
Tubule366 464 of 4 4.90Up
Hindgut57 34 of 4 0.80Down
Heart58 34 of 4 0.78Down
Fat body64 64 of 4 0.86None
Ovary122 74 of 4 1.60Up
Testis47 34 of 4 0.60Down
Male accessory glands97 34 of 4 1.30Up
Virgin spermatheca74 84 of 4 1.00None
Mated spermatheca99 94 of 4 1.33None
Adult carcass61 64 of 4 0.80None
Larval CNS95 94 of 4 1.28Up
Larval Salivary gland89 14 of 4 1.19Up
Larval midgut72 154 of 4 0.97None
Larval tubule159 74 of 4 2.10Up
Larval hindgut62 114 of 4 0.83None
Larval fat body521 654 of 4 7.00Up
Larval trachea40 94 of 4 0.54Down
Larval carcass126 494 of 4 1.69None
S2 cells (growing)105 04 of 4 1.41Up
Whole fly74 34 of 4

Looking for CG5489-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime